CX292477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15 Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV---ERLLSPLRVST--YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 + G V G KEA+ + + D+ T L+ AC LE K +H ++ + S + V T +N ++ MY++C S+D A VF + +RDL++W+T+I G A + E ++++F + ++ + P++ F+GV ACS G V EG +F Sbjct: 247 ISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYF 403
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15 Identity = 42/147 (28.57%), Postives = 77/147 (52.38%), Query Frame = 3 Query: 243 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683 G +A+ + + + + D T L+ +C AL +H + V N ++ MY++C S+++A VF+ M +RD+ +W++MI G+ +G G +A+ F + +G++P+ F+G+ CS G V EG+ HFE Sbjct: 187 GLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFE 333
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15 Identity = 47/152 (30.92%), Postives = 75/152 (49.34%), Query Frame = 3 Query: 237 KEGKVKEAIEVLG--LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 K GK EA+ + E + S + T ++QAC ALE+ K +H ++ R + + ++ MY C ++ VF M +RD+ SW+++I+ + +G G+ A+ IF + G P FV V ACS G V EG FE+ Sbjct: 260 KNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFET 411
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15 Identity = 38/153 (24.84%), Postives = 81/153 (52.94%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 + G + + EA+ + ++ + + + T ++ +C +L+ K +H++ ++ V ++ M+++C S+DDA S+F M +D +W MI +A +G E ++ +F + + ++PD+ F+G+ +ACS G V EG +F Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYF 354 HSP 2 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 312 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDV 659 TF L++AC AKALEE + +H +L V ++ MY+EC+ +D A VF + E + ++ MITG+A+ +A+ +F + + LKP++ + V S+C+ LG + Sbjct: 131 TFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSL 246
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP127_ARATH (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15 Identity = 52/201 (25.87%), Postives = 92/201 (45.77%), Query Frame = 3 Query: 93 QYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLE---QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 + +SY + N M+ +V +C DD +N + +G + G E +E + K + D + S ++ AC +LE + V + + ++ +Y +C ++ VF M + D W++MI+G+A NG G +A+D+F + AG++P F+ V +AC+ G V EG FES Sbjct: 378 EVESYDTILLNSMI--KVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFES 576
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15 Identity = 51/158 (32.28%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLG-LLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS---PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 + G + G +A+E+L + E+ C + + T S + AC AL K +H + R PL VS N ++ MY++C S+ DA VF NM ++ +W +++TG+ +G GE+A+ IF + ++ G K D + V ACS G + +GM +F Sbjct: 447 IGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS--NCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602 HSP 2 Score: 69.3218 bits (168), Expect = 2.130e-11 Identity = 42/140 (30.00%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 243 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVH--EHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQF-KQAGLKPDDQIFVGVFSACSALG 653 G + + + GL+ + D TF + +ACG+ ++ ++ H V +S + V N ++ MYS C S+ DA VF M+ D+ SW+++I +AK G + A+++FS+ + G +PD+ V V C++LG Sbjct: 106 GCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVG--NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15 Identity = 49/155 (31.61%), Postives = 79/155 (50.97%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQC-ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683 + G + G EAIE+ ++E++ I+ + T+ ++ AC A AL + +H + + L V + MY +C ++DA S+F + + W+T+I +G GE AV +F + G+KPD FV + SACS G V EG FE Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE 576
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP231_ARATH (Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15 Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 3 Query: 294 ISVDLPTFSQLMQACGDAKALEEAKAVHEH--VERLLSPLRVSTY--NGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668 I D+ T + ++ CG +L + + +H + V LL+ + + N ++ MY +C + DA VF +M +D SW+ MI G+ GE A+D+FS +AG+KPD+ FVG+ ACS G + EG Sbjct: 359 IRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEG 487
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15 Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = 3 Query: 312 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683 T+ L + C D + + HV +L L +N + M++ C M++A VF RDL SW+ +I G+ K G E A+ ++ + G+KPDD +G+ S+CS LGD+ G +E Sbjct: 158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYE 281 HSP 2 Score: 78.5666 bits (192), Expect = 3.511e-14 Identity = 47/181 (25.97%), Postives = 85/181 (46.96%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGL-------------------------------GEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGM 671 ++G K G+ ++AI V L+E + + D T L+ +C L K +E+V+ + + N ++ M+S+C + +A +F N+ +R + SW TMI+G+A+ GL G+DA+ +F + + + KPD+ + SACS LG + G+ Sbjct: 229 INGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409 HSP 3 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 39/153 (25.49%), Postives = 77/153 (50.33%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 + G V+ + ++A+ + ++ D T + AC AL+ +H ++E+ L V+ ++ MY++C ++ +A SVF + R+ ++ +I G A +G A+ F++ AG+ PD+ F+G+ SAC G + G +F Sbjct: 361 IGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 513
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15 Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSAL 650 +D V+ KEA+ + + + + + + AC D LE + +H+ L VS N ++ MY +C +D A S+F + R L SW+ MI GFA+NG DA++ FSQ + +KPD +V V +A + L Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451 HSP 2 Score: 79.7221 bits (195), Expect = 1.576e-14 Identity = 41/151 (27.15%), Postives = 77/151 (50.99%), Query Frame = 3 Query: 228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 680 G + G+ +A+ + + + D T+ ++ A + AK +H V R V ++ MY++C ++ A +F M+ER +T+W+ MI G+ +G G+ A+++F + ++ +KP+ F+ V SACS G V G+ F Sbjct: 412 GFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCF 562 HSP 3 Score: 77.7962 bits (190), Expect = 5.989e-14 Identity = 41/143 (28.67%), Postives = 72/143 (50.35%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSAL 650 L G K + +A++ + + + F+ L++ CGD L K +H + + L + G+ MY++C +++A VF M ERDL SW+T++ G+++NG+ A+++ + LKP V V A SAL Sbjct: 107 LKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249 HSP 4 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 38/147 (25.85%), Postives = 75/147 (51.02%), Query Frame = 3 Query: 228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668 G + G + A+E++ + ++ + T ++ A + + K +H + R V+ ++ MY++C S++ A +F M ER++ SW++MI + +N ++A+ IF + G+KP D +G AC+ LGD+ G Sbjct: 210 GYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356 The following BLAST results are available for this feature:
BLAST of CX292477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 179
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX292477 ID=CX292477; Name=CX292477; organism=Citrus clementina; type=EST; length=687bpback to top |