CX292485

Overview
NameCX292485
Unique NameCX292485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPG+K  +IKVQVE+DNVL++SGER+RE +E +G KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV            TI+V++A
Sbjct:   61 DMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.446e-23
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPG+K  +I+VQ+E++NVL++SG+R+R+ +E +G K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+            TI+V++A
Sbjct:   62 DMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.136e-20
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKR-----EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPG+   D++V+VED NVL ISGER+R     ++  +G KY+RMERR+GKFMR+F LPE+A+++ + A  +DGVLTVTVD            +EVK+A
Sbjct:   67 DMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVA 165          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+VED NVL ISGER +E E+   K+ R+ER  GKFMR+F LPENA +E + A  ++GVLTV V
Sbjct:   68 DLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVV 142          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.419e-17
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PG+K  ++KV+VED NVL++SGER RE+E    K+ R+ER  GKF+R+F LPE+A VE + A  ++GVLTVTV
Sbjct:   60 DLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTV 134          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.466e-17
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  GKFMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   70 DIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTV 144          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+VE+D VL ISGER  E+E    K+ RMER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   63 DLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 40/76 (52.63%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 229
            D+PGLK  +IKV+VE++ VL +SGERK+EEEK G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+D
Sbjct:   83 DVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLD 158          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 38/75 (50.67%), Postives = 59/75 (78.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++K++VE++ VL +SGERKREEEK G ++ R+ER  GKF R+F LP+N ++E++ A  ++GVLT+ +
Sbjct:   87 DIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINL 161          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+V+D N+L ISGER RE+E+   K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 142          
The following BLAST results are available for this feature:
BLAST of CX292485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HS176_ARATH5.263e-2662.1117.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH5.446e-2353.6817.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ1.136e-2050.5119.0 kDa class II heat shock protein OS=Oryza sati... [more]
HS181_ARATH1.535e-1757.3318.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_WHEAT3.419e-1756.0016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP16_SOYBN4.466e-1758.6718.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLLC5.832e-1757.3317.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP41_SOYBN7.617e-1752.6322.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH7.617e-1750.6722.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS177_ORYSJ7.617e-1756.0017.7 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionC04016C05SK FlavFr1 Citrus clementina cDNA clone C04016C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292485 ID=CX292485; Name=CX292485; organism=Citrus clementina; type=EST; length=600bp
CGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAGGACG
ACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAAAGAT
GGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGAGGAA
ATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTGTGTC
AGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGAGCCC
AAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTGAGAGAGAG
AATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTACCGGTTGTTAT
GAATAATTTTGCTTGTGGGTTTGACGGTACTATGCCTCTGTAATCTCCTC
TTCCTTTTTCTTTTTTTCTCTTTCTTCCCTTTTTTGTCCAAAATTCTCTC
TGTTCACTGGTTTGTGGTTCGGTCTTTGGCATTCCGGAGGGGAAGCTGAC
GGCCGTCTACTGGTAGACATCTAGTTGTTATAATTAATGAAAAATCCAGC
TTTTATCTGAAAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCGGGTCCCC
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