CX292485

Overview
NameCX292485
Unique NameCX292485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.216e-16
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+VED NVL ISGER +E+E+   K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 137          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.216e-16
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PG+K  ++KV+VE+ NVL+ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTV 133          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.216e-16
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PG+K  ++KV+VE+ NVL+ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTV 133          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.780e-16
Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+VE+  VL ISGER +E+E+   K+ R+E   GKF+R+F LPENANV+ + A  ++GVLTVTV
Sbjct:   68 DLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTV 142          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.780e-16
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+VEDD VL ISGER  E+E    ++ R+ER  GKF+R+F LPENA ++ + A  ++GVLTVTV
Sbjct:   67 DLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTV 141          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.780e-16
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGL+  ++KV+VED N+L ISGER  E E+   K+ R+ER  GKF R+F LPENA +E I A  ++GVL+VTV
Sbjct:   66 DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTV 140          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.448e-16
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+V+D N+L ISGER +E+E+   ++ R+ER  GKF+R+F LP+NA  E I A  ++GVLTVTV
Sbjct:   70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTV 144          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.422e-16
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  GKF R+F LPENA V  + A  ++GVLTVTV
Sbjct:   63 DIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTV 137          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.422e-16
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV+VE+D VL ISGER  E+E     + R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   63 DLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.100e-15
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 226
            D+PGLK  ++KV++E+  VL ISGER +E+E+   K+ R+ER  GKF+R+F LPENA V+ + A   +GV+TVTV
Sbjct:   66 DLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTV 140          
The following BLAST results are available for this feature:
BLAST of CX292485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HS174_ORYSJ2.216e-1657.3317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ2.216e-1653.3316.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ2.216e-1653.3316.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP12_DAUCA3.780e-1654.6718.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_PEA3.780e-1654.6718.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS17C_ARATH3.780e-1654.6717.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS17A_ORYSJ6.448e-1653.3317.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP14_SOYBN8.422e-1656.0017.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE8.422e-1654.6717.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_DAUCA1.100e-1552.0017.8 kDa class I heat shock protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionC04016C05SK FlavFr1 Citrus clementina cDNA clone C04016C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292485 ID=CX292485; Name=CX292485; organism=Citrus clementina; type=EST; length=600bp
CGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAGGACG
ACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAAAGAT
GGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGAGGAA
ATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTGTGTC
AGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGAGCCC
AAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTGAGAGAGAG
AATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTACCGGTTGTTAT
GAATAATTTTGCTTGTGGGTTTGACGGTACTATGCCTCTGTAATCTCCTC
TTCCTTTTTCTTTTTTTCTCTTTCTTCCCTTTTTTGTCCAAAATTCTCTC
TGTTCACTGGTTTGTGGTTCGGTCTTTGGCATTCCGGAGGGGAAGCTGAC
GGCCGTCTACTGGTAGACATCTAGTTGTTATAATTAATGAAAAATCCAGC
TTTTATCTGAAAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCGGGTCCCC
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