CX292496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28 Identity = 64/121 (52.89%), Postives = 89/121 (73.55%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV IP+NKR+ SL+YI+G+G +AR+I L++ E+K +SE+E++ IR+ + + Y +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKKK Sbjct: 2 ARIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKK 122
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_EXIS2 (30S ribosomal protein S13 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP KRI SL YI+GVG+T A+++L + + E+ T++++EE+L +RD + K +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPREKRIVISLTYIYGVGKTTAQKVLKEAGISEDTRTRELTEEQLNQLRDGLDKVKVEGDLRREISLNIKRLIEIGCYRGVRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACHD (30S ribosomal protein S13 OS=Bacillus halodurans GN=rpsM PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28 Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL YI+GVGR+ A++IL + EN +D++EEEL IR V ++ +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAVEEFKVEGDLRREVSLNIKRLIEIGAYRGIRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ORITB (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28 Identity = 61/122 (50.00%), Postives = 89/122 (72.95%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKP 561 +R+ V +P NKR+ L YI+G+GR+ A++I ++++ NK KD+S +EL+ +R + SKY +EGDLRR L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKP Sbjct: 2 SRISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKP 123
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_LYSSC (30S ribosomal protein S13 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28 Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL YI G+G+T A+++L D + E+ +D++E+EL IR+++ Y +EGDLRR +L I+RL EI +RGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGKTTAQKVLADAGISEDTRVRDLTEDELNKIREQLDSYKLEGDLRRETSLNIKRLMEIGSFRGIRHRRGLPVRGQNTKNNARTRKGPRKTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_GEOSW (30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL YI+G+G++ A++IL + + E+ +D++EEEL IR+ V + +EGDLRR +L I+RL EI CYRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ACHLI (30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28 Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP KR+ SLQYI+G+G+T A+++L + + I KD+++++L IR EV+K + EGDLRR + L I+RL EI YRGIRH +GLP GQ+T+NN RT KGK A+ GKK+ Sbjct: 2 ARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEVAKIVTEGDLRRESTLNIKRLMEIGSYRGIRHRKGLPVNGQNTRNNARTRKGKPKAVTGKKQ 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_AYWBP (30S ribosomal protein S13 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28 Identity = 63/125 (50.40%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGK-RVAIAGKKKPLVN 570 AR+ G++IP++KR+ +L YI+G+G + +IL +LK++ I K+++E++L +R E++KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK + AIAGKKK VN Sbjct: 2 ARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELKIDQNIRVKNLTEQQLSALRIEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAAIAGKKKNKVN 126
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ANOFW (30S ribosomal protein S13 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28 Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL YI+G+G+ A++IL + + E+ +D++EEEL IR+ V + +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKATAQKILAEAGVSEDTRVRDLTEEELGKIREIVDRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCMO (30S ribosomal protein S13 OS=Mycoplasma mobile GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28 Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555 AR+ VEIPNNKR+ SL Y++G+GR+ ++QIL + ++ I KD+SEE+L IR+ S++ EGDLRR L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R +AGKK Sbjct: 2 ARILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIASRFTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120 The following BLAST results are available for this feature:
BLAST of CX292496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX292496 ID=CX292496; Name=CX292496; organism=Citrus clementina; type=EST; length=617bpback to top |