CX292496

Overview
NameCX292496
Unique NameCX292496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28
Identity = 64/121 (52.89%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV IP+NKR+  SL+YI+G+G  +AR+I   L++ E+K    +SE+E++ IR+ + + Y +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KGK VAIAGKKK
Sbjct:    2 ARIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKK 122          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_EXIS2 (30S ribosomal protein S13 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP  KRI  SL YI+GVG+T A+++L +  + E+  T++++EE+L  +RD + K  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPREKRIVISLTYIYGVGKTTAQKVLKEAGISEDTRTRELTEEQLNQLRDGLDKVKVEGDLRREISLNIKRLIEIGCYRGVRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACHD (30S ribosomal protein S13 OS=Bacillus halodurans GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.557e-28
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL YI+GVGR+ A++IL    + EN   +D++EEEL  IR  V ++ +EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAVEEFKVEGDLRREVSLNIKRLIEIGAYRGIRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ORITB (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 61/122 (50.00%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKP 561
            +R+  V +P NKR+   L YI+G+GR+ A++I  ++++  NK  KD+S +EL+ +R  + SKY +EGDLRR   L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKP
Sbjct:    2 SRISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKP 123          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_LYSSC (30S ribosomal protein S13 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL YI G+G+T A+++L D  + E+   +D++E+EL  IR+++  Y +EGDLRR  +L I+RL EI  +RGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIFGIGKTTAQKVLADAGISEDTRVRDLTEDELNKIREQLDSYKLEGDLRRETSLNIKRLMEIGSFRGIRHRRGLPVRGQNTKNNARTRKGPRKTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_GEOSW (30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL YI+G+G++ A++IL +  + E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ACHLI (30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP  KR+  SLQYI+G+G+T A+++L +  +   I  KD+++++L  IR EV+K + EGDLRR + L I+RL EI  YRGIRH +GLP  GQ+T+NN RT KGK  A+ GKK+
Sbjct:    2 ARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEVAKIVTEGDLRRESTLNIKRLMEIGSYRGIRHRKGLPVNGQNTRNNARTRKGKPKAVTGKKQ 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_AYWBP (30S ribosomal protein S13 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28
Identity = 63/125 (50.40%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGK-RVAIAGKKKPLVN 570
            AR+ G++IP++KR+  +L YI+G+G   + +IL +LK++  I  K+++E++L  +R E++KY +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ T+NN  T+KGK + AIAGKKK  VN
Sbjct:    2 ARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELKIDQNIRVKNLTEQQLSALRIEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAAIAGKKKNKVN 126          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ANOFW (30S ribosomal protein S13 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL YI+G+G+  A++IL +  + E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKATAQKILAEAGVSEDTRVRDLTEEELGKIREIVDRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCMO (30S ribosomal protein S13 OS=Mycoplasma mobile GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555
            AR+  VEIPNNKR+  SL Y++G+GR+ ++QIL +  ++  I  KD+SEE+L  IR+  S++  EGDLRR   L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R  +AGKK
Sbjct:    2 ARILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIASRFTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120          
The following BLAST results are available for this feature:
BLAST of CX292496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_ACICJ1.192e-2852.8930S ribosomal protein S13 OS=Acidiphilium cryptum ... [more]
RS13_EXIS21.557e-2853.3330S ribosomal protein S13 OS=Exiguobacterium sibir... [more]
RS13_BACHD1.557e-2855.0030S ribosomal protein S13 OS=Bacillus halodurans G... [more]
RS13_ORITB2.034e-2850.0030S ribosomal protein S13 OS=Orientia tsutsugamush... [more]
RS13_LYSSC2.034e-2851.6730S ribosomal protein S13 OS=Lysinibacillus sphaer... [more]
RS13_GEOSW2.034e-2853.3330S ribosomal protein S13 OS=Geobacillus sp. (stra... [more]
RS13_ACHLI2.034e-2851.6730S ribosomal protein S13 OS=Acholeplasma laidlawi... [more]
RS13_AYWBP3.469e-2850.4030S ribosomal protein S13 OS=Aster yellows witches... [more]
RS13_ANOFW3.469e-2852.5030S ribosomal protein S13 OS=Anoxybacillus flavith... [more]
RS13_MYCMO4.531e-2853.7830S ribosomal protein S13 OS=Mycoplasma mobile GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04016D04SK FlavFr1 Citrus clementina cDNA clone C04016D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292496 ID=CX292496; Name=CX292496; organism=Citrus clementina; type=EST; length=617bp
CTTGCCGTTAGTCACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACC
AAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCT
CCGTTATCTGCAACGGACATAACAATAATCTTCTCACCAACGCTTCCCTG
TCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATG
TGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACT
CGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTC
GTTGATCTCAAAATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGA
GCTCATTACAATTCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATT
TGAGGCGGTTCAATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGC
TACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACAC
AAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGA
AAAAGAAGCCCCTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGG
ATAGGGTTGATTTTCTA
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