CX292496

Overview
NameCX292496
Unique NameCX292496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACWK (30S ribosomal protein S13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL Y+ G+GRT A +I+ +  + ++   +D+SE+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKIITEAGISSETRVRDLSEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACC2 (30S ribosomal protein S13 OS=Bacillus cereus (strain G9842) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + ++   +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILTEAGISSETRVRDLTEDELGRIRDVIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_STRGC (30S ribosomal protein S13 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDVRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_LARHH (30S ribosomal protein S13 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555
            AR+ GV IPN++ I   LQ I+G+G TRA+ I     +++  K+ KD+++ E+  +RDE++K+ IEGDLRR   + I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R  IAGKK
Sbjct:    2 ARIAGVNIPNHQHIWVGLQAIYGIGATRAKVICSAAGIEISTKV-KDLTDAEMEKLRDEIAKFTIEGDLRREVTMNIKRLMDLGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKPIAGKK 120          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_GRAFK (30S ribosomal protein S13 OS=Gramella forsetii (strain KT0803) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 61/120 (50.83%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP  KR   +L YI G+GR+RA++IL   K+ E+K   D  ++E+  IR+ V ++ IEG+LR    ++I+RL +I CYRGIRH  GLP RGQ TKNN RT KG+R  +A KKK
Sbjct:    2 ARIAGVDIPKQKRGVIALTYIFGIGRSRAQEILAQAKVDESKKVSDWDDDEIGKIREAVGQFTIEGELRTEVQISIKRLMDIGCYRGIRHRAGLPLRGQRTKNNSRTRKGRRKTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_EXISA (30S ribosomal protein S13 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP  KRI  SL YI+G+G+T+A++IL    + E   T+D++E+EL  IR+ +    +EGDLRR  +L I+RL EI  YRGIRH + LP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPREKRIVISLTYIYGIGKTKAQEILKAANVSEETRTRDLTEDELNRIREAIDGIKVEGDLRREVSLNIKRLIEIGAYRGIRHRRSLPVRGQNTKNNSRTRKGPRRTVANKKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_CAUCR (30S ribosomal protein S13 OS=Caulobacter crescentus GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV IP NKR+  +LQYIHG+G+  AR+I+  + +E+ +    +++ E++ IR+ + + Y +EGDLRR N++ I+RL ++ CYRG+RH +GLP RGQ T  N RT KG    IAGKKK
Sbjct:    2 ARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETIDRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_CAUCN (30S ribosomal protein S13 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV IP NKR+  +LQYIHG+G+  AR+I+  + +E+ +    +++ E++ IR+ + + Y +EGDLRR N++ I+RL ++ CYRG+RH +GLP RGQ T  N RT KG    IAGKKK
Sbjct:    2 ARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETIDRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACST (30S ribosomal protein S13 OS=Bacillus stearothermophilus GN=rpsM PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL YI+G+G+  A+ +      E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKPTAQILKEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 120          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACHK (30S ribosomal protein S13 OS=Bacillus thuringiensis subsp. konkukian GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL Y+ G+GRT A +IL +  + E    +D++E+EL  IRD + +  +EGDLRR  +L I+RL EI  YRG+RH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
The following BLAST results are available for this feature:
BLAST of CX292496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BACWK6.543e-2750.0030S ribosomal protein S13 OS=Bacillus weihenstepha... [more]
RS13_BACC26.543e-2750.0030S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_STRGC8.545e-2752.5030S ribosomal protein S13 OS=Streptococcus gordoni... [more]
RS13_LARHH8.545e-2750.0030S ribosomal protein S13 OS=Laribacter hongkongen... [more]
RS13_GRAFK8.545e-2750.8330S ribosomal protein S13 OS=Gramella forsetii (st... [more]
RS13_EXISA8.545e-2752.5030S ribosomal protein S13 OS=Exiguobacterium sp. (... [more]
RS13_CAUCR8.545e-2747.9330S ribosomal protein S13 OS=Caulobacter crescentu... [more]
RS13_CAUCN8.545e-2747.9330S ribosomal protein S13 OS=Caulobacter crescentu... [more]
RS13_BACST8.545e-2751.2630S ribosomal protein S13 OS=Bacillus stearothermo... [more]
RS13_BACHK8.545e-2750.8330S ribosomal protein S13 OS=Bacillus thuringiensi... [more]

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Properties
Property NameValue
Genbank descriptionC04016D04SK FlavFr1 Citrus clementina cDNA clone C04016D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292496 ID=CX292496; Name=CX292496; organism=Citrus clementina; type=EST; length=617bp
CTTGCCGTTAGTCACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACC
AAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCT
CCGTTATCTGCAACGGACATAACAATAATCTTCTCACCAACGCTTCCCTG
TCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATG
TGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACT
CGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTC
GTTGATCTCAAAATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGA
GCTCATTACAATTCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATT
TGAGGCGGTTCAATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGC
TACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACAC
AAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGA
AAAAGAAGCCCCTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGG
ATAGGGTTGATTTTCTA
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