CX292496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACWK (30S ribosomal protein S13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27 Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL Y+ G+GRT A +I+ + + ++ +D+SE+EL IRD + + +EGDLRR +L I+RL EI YRG+RH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKIITEAGISSETRVRDLSEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACC2 (30S ribosomal protein S13 OS=Bacillus cereus (strain G9842) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27 Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL Y+ G+GRT A +IL + + ++ +D++E+EL IRD + + +EGDLRR +L I+RL EI YRG+RH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILTEAGISSETRVRDLTEDELGRIRDVIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_STRGC (30S ribosomal protein S13 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IPN+KR+ SL Y++G+G +++IL + + KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDVRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_LARHH (30S ribosomal protein S13 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555 AR+ GV IPN++ I LQ I+G+G TRA+ I +++ K+ KD+++ E+ +RDE++K+ IEGDLRR + I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R IAGKK Sbjct: 2 ARIAGVNIPNHQHIWVGLQAIYGIGATRAKVICSAAGIEISTKV-KDLTDAEMEKLRDEIAKFTIEGDLRREVTMNIKRLMDLGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKPIAGKK 120
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_GRAFK (30S ribosomal protein S13 OS=Gramella forsetii (strain KT0803) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 61/120 (50.83%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP KR +L YI G+GR+RA++IL K+ E+K D ++E+ IR+ V ++ IEG+LR ++I+RL +I CYRGIRH GLP RGQ TKNN RT KG+R +A KKK Sbjct: 2 ARIAGVDIPKQKRGVIALTYIFGIGRSRAQEILAQAKVDESKKVSDWDDDEIGKIREAVGQFTIEGELRTEVQISIKRLMDIGCYRGIRHRAGLPLRGQRTKNNSRTRKGRRKTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_EXISA (30S ribosomal protein S13 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP KRI SL YI+G+G+T+A++IL + E T+D++E+EL IR+ + +EGDLRR +L I+RL EI YRGIRH + LP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPREKRIVISLTYIYGIGKTKAQEILKAANVSEETRTRDLTEDELNRIREAIDGIKVEGDLRREVSLNIKRLIEIGAYRGIRHRRSLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_CAUCR (30S ribosomal protein S13 OS=Caulobacter crescentus GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV IP NKR+ +LQYIHG+G+ AR+I+ + +E+ + +++ E++ IR+ + + Y +EGDLRR N++ I+RL ++ CYRG+RH +GLP RGQ T N RT KG IAGKKK Sbjct: 2 ARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETIDRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_CAUCN (30S ribosomal protein S13 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV IP NKR+ +LQYIHG+G+ AR+I+ + +E+ + +++ E++ IR+ + + Y +EGDLRR N++ I+RL ++ CYRG+RH +GLP RGQ T N RT KG IAGKKK Sbjct: 2 ARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETIDRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACST (30S ribosomal protein S13 OS=Bacillus stearothermophilus GN=rpsM PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL YI+G+G+ A+ + E+ +D++EEEL IR+ V + +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKPTAQILKEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 120
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACHK (30S ribosomal protein S13 OS=Bacillus thuringiensis subsp. konkukian GN=rpsM PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27 Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL Y+ G+GRT A +IL + + E +D++E+EL IRD + + +EGDLRR +L I+RL EI YRG+RH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121 The following BLAST results are available for this feature:
BLAST of CX292496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX292496 ID=CX292496; Name=CX292496; organism=Citrus clementina; type=EST; length=617bpback to top |