CX293820

Overview
NameCX293820
Unique NameCX293820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:345..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.395e-54
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY+EPP APLFE  ELSSWSFYRAGIAEFVATFL LY+TVLTVMGVSKS SKC TVGIQGIAWAFGGMIFALVYCTAG+SGGHINPAVTFGL LARKLSLTRAV+Y++MQCL A+
Sbjct:   38 DYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAV 152          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.202e-53
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY EPPPAP FEPGEL SWSFYRAGIAEF+ATFL LY+TVLTVMGV ++ + C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FY++MQCL AI
Sbjct:   31 DYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAI 145          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.202e-53
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY EPPPAP FEPGELSSWSF+RAGIAEF+ATFL LYITVLTVMGV +S + C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA++Y++MQCL AI
Sbjct:   30 DYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAI 144          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.202e-53
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY EPPPAP FEPGELSSWSF+RAGIAEF+ATFL LYITVLTVMGV +S + C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA++Y++MQCL AI
Sbjct:   30 DYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAI 144          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.497e-53
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY EPPPAPLFEPGEL SWSFYR GIAEFVATFL LYI++LTVMGVSKS SKC+TVGIQGIAW+FGGMI ALVYCTAGIS GHINPAVTFGLFLARKLSLTRAVFY+IMQCL AI
Sbjct:   32 DYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGVSKSTSKCATVGIQGIAWSFGGMILALVYCTAGIS-GHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAI 145          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 5.965e-53
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY EPP AP+FE  EL+SWSFYRAGIAEFVATFL LYI++LTVMGV+KS SKC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYM MQCL AI
Sbjct:   32 DYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVNKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAI 146          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 3.875e-44
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAPL + GEL SWSFYRA IAEF+AT L LY+TV TV+G  K    C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMI QCL AI
Sbjct:   16 DYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAI 130          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.473e-43
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAP F+ GEL  WSF+RA IAEF+AT L LYITV TV+G  K    C++VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMI QC  AI
Sbjct:   18 DYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDPCASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAI 132          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.126e-42
Identity = 82/115 (71.30%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAPL +  EL  WSFYRA IAEF+AT L LY+TV TV+G       C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCL AI
Sbjct:   14 DYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAI 128          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.627e-42
Identity = 84/117 (71.79%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DYT+PPPAPLF+ GEL  WSFYRA IAEF+AT L LYITV TV+G  V  S  +C  VG  GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+S+ RAV Y++ QCL  I
Sbjct:   16 DYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGI 132          
The following BLAST results are available for this feature:
BLAST of CX293820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PIP16_MAIZE5.395e-5486.96Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP15_ARATH1.202e-5384.35Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP11_VICFA1.202e-5385.22Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH1.202e-5385.22Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP11_MAIZE3.497e-5388.70Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP13_ORYSJ5.965e-5386.96Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP27_ARATH3.875e-4473.91Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP1_ATRCA1.473e-4371.30Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP28_ARATH2.126e-4271.30Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP26_ORYSJ3.627e-4271.79Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC05001A07SK FlavSen1 Citrus clementina cDNA clone C05001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293820 ID=CX293820; Name=CX293820; organism=Citrus clementina; type=EST; length=346bp
GATTACACGGAGCCACCTCCGGCGCCGCTCTTCGAGCCCGGCGAATTATC
GTCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCT
TGGTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAA
AGCAAATGTTCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGG
CATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACA
TTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTT
ACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAAGGGCCATAT
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