CX293820

Overview
NameCX293820
Unique NameCX293820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.187e-42
Identity = 86/123 (69.92%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DYT+PPPAPL +  EL+ WS YRA IAEF+AT L LYITV TV+G        V+ + + CS VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV Y+I QCL AI
Sbjct:   19 DYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAI 141          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.080e-42
Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSK-------SKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAPL +P EL+ WS YRA IAEF+AT L LYITVLT++G  +         ++C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YMI QC  AI
Sbjct:   18 DYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAI 139          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.055e-41
Identity = 83/123 (67.48%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DYT+PPPAPL +  EL SWS YRA IAEF+AT L LYITV TV+G         S + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCL AI
Sbjct:   20 DYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAI 142          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 83/123 (67.48%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DYT+PPPAPL +  EL SWS YRA IAEF+AT L LYITV TV+G         S + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCL AI
Sbjct:   20 DYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAI 142          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.351e-41
Identity = 86/121 (71.07%), Postives = 94/121 (77.69%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVS-KSKSK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPP P F+  EL+ WS YRA IAEFVAT L LYITVLTV+G   +S +K     C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCL AI
Sbjct:   15 DYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAI 135          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.010e-41
Identity = 85/121 (70.25%), Postives = 94/121 (77.69%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVS-KSKSK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPP P F+  EL+ WS YRA IAEFVAT L LY+TVLTV+G   +S +K     C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM+ QCL AI
Sbjct:   15 DYEDPPPTPFFDAEELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAI 135          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.237e-41
Identity = 84/123 (68.29%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DYT+PPPAPL +  EL+ WS YRA IAEF+AT L LYITV TV+G         S   + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+I QCL AI
Sbjct:   20 DYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAI 142          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.237e-41
Identity = 81/125 (64.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSK----------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DYT+PPPAPL +  EL SWS YRA IAEF+AT L LY+TV TV+G             + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YM+ QCL A+
Sbjct:   20 DYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAV 144          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.840e-41
Identity = 84/123 (68.29%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DYT+PPPAPL +  EL+ WS YRA IAEF+AT L LYITV TV+G         S   + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+I QCL AI
Sbjct:   19 DYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAI 141          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.934e-41
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSK------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPP PLF+  EL  WSFYRA IAEF+AT L LY+T++TV+G         +  +C+ VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK++L RAV YM+ QCL AI
Sbjct:   16 DYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAI 136          
The following BLAST results are available for this feature:
BLAST of CX293820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PIP22_ORYSJ6.187e-4269.92Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP27_MAIZE8.080e-4267.21Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP21_ORYSJ1.055e-4167.48Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE1.378e-4167.48Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_ARATH2.351e-4171.07Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP23_ARATH4.010e-4170.25Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP23_MAIZE5.237e-4168.29Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_MAIZE5.237e-4164.80Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP24_MAIZE6.840e-4168.29Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP25_ARATH8.934e-4165.29Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC05001A07SK FlavSen1 Citrus clementina cDNA clone C05001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293820 ID=CX293820; Name=CX293820; organism=Citrus clementina; type=EST; length=346bp
GATTACACGGAGCCACCTCCGGCGCCGCTCTTCGAGCCCGGCGAATTATC
GTCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCT
TGGTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAA
AGCAAATGTTCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGG
CATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACA
TTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTT
ACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAAGGGCCATAT
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