CX293820

Overview
NameCX293820
Unique NameCX293820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:345..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 84/121 (69.42%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSK------CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAP  +  EL  WSFYRA IAEFVAT L LYITVLTV+G             C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y+I QCL AI
Sbjct:   17 DYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAI 137          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.434e-40
Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY++PPPAPL +  EL+ WS YRA IAEFVAT L LYITV TV+G         S   + C  VG+ GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGLFLARK+SL RA+ Y++ QCL AI
Sbjct:   15 DYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAI 137          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.791e-40
Identity = 82/123 (66.67%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY++PPPAPL +  EL+ WS YRA IAEFVAT L LYITV TV+G         + + + CS VGI GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGLFLARK+SL RAV Y++ Q L AI
Sbjct:   20 DYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAI 142          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.877e-40
Identity = 80/123 (65.04%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAPL +  EL  WS YRA IAEFVAT L LY+TV TV+G         S   + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCL A+
Sbjct:   14 DYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAV 136          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.290e-39
Identity = 79/120 (65.83%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRA 342
            DY +PPP   FE  EL  WSFYRA IAEF+AT L LY+TVLTV+G      ++     C++VG+ GI+WAFGGMIF LVYCTAGISGGHINPAVTFGLFLA K+SL RAV YM+ QCL A
Sbjct:   16 DYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGA 135          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.200e-39
Identity = 84/123 (68.29%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAPL +  EL  WS YRA IAEFVAT L LYITV TV+G         S   + CS VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YM  Q L AI
Sbjct:   19 DYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAI 141          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.753e-39
Identity = 80/123 (65.04%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAPL +  EL  WS YRA IAEFVAT L LY+TV TV+G        V+ + + C  VG+ GIAWAFGGMIF LVYCTAG+SGGHINPAVT GLFLARK+SL RA+ YM  QCL AI
Sbjct:   17 DYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAI 139          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.433e-38
Identity = 78/121 (64.46%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSK------CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAP F+  EL  W  YRA IAEFVAT L LY+++LTV+G             C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVT GLFLARK+SL R V Y++ QCL AI
Sbjct:   17 DYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAI 137          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.567e-35
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            DY +PPPAPL + GEL  WS YRA IAEF AT L++ I+V TV+G  K +S     G+ GIAWAFGG+IF LVYCTAGISGGH+NPAVTF + LAR++SL RA  Y + QC+ A+
Sbjct:   13 DYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIG-EKRQSGEGGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAV 126          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.249e-34
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    4 YTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSK---CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            Y +PPPAPL +  EL  WS YRA IAEF+AT + LY+++ TV+G    ++    C+ VG  G+AW+FG  IF LVYCT G+SGGHINPAVT GLF  RKLSL R V Y++ QCL AI
Sbjct:   23 YWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAI 139          
The following BLAST results are available for this feature:
BLAST of CX293820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PIP21_ARATH1.167e-4069.42Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP25_MAIZE4.434e-4065.85Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP23_ORYSJ5.791e-4066.67Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP25_ORYSJ9.877e-4065.04Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP26_ARATH1.290e-3965.83Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP26_MAIZE2.200e-3968.29Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP24_ORYSJ3.753e-3965.04Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP24_ARATH2.433e-3864.46Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP28_ORYSJ9.567e-3560.87Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ1.249e-3457.26Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC05001A07SK FlavSen1 Citrus clementina cDNA clone C05001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293820 ID=CX293820; Name=CX293820; organism=Citrus clementina; type=EST; length=346bp
GATTACACGGAGCCACCTCCGGCGCCGCTCTTCGAGCCCGGCGAATTATC
GTCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCT
TGGTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAA
AGCAAATGTTCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGG
CATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACA
TTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTT
ACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAAGGGCCATAT
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