CX293820

Overview
NameCX293820
Unique NameCX293820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:345..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   61 FYRAGIAEFVATFLVLYITVLTVMGVSKS-KSKCSTVGIQG---IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            F+RA +AEF+A  L ++I++ + +G     KS  +T  +Q    ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+ AI
Sbjct:   10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAI 108          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.911e-12
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   61 FYRAGIAEFVATFLVLYITVLTVMGVSKS-KSKCSTVGIQG---IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            F+RA +AEF+A  L ++I++ + +G     KS  +T  +Q    ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+ AI
Sbjct:   10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAI 108          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.108e-12
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   61 FYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQG----IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            F+RA +AEF+A  L ++I++ + +G +       T G       ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+ AI
Sbjct:   10 FWRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAI 108          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.713e-12
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   58 SFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            +F++A  AEF+AT + + + V + +    S++    V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+I QCL AI
Sbjct:   33 AFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAI 127          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 8.713e-12
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   43 ELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            E+    F+RA +AEF+A  L ++I++ + +G +    +  T+    +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+ AI
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAI 106          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.713e-12
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   43 ELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            E+    F+RA +AEF+A  L ++I++ + +G +    +  T+    +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+ AI
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAI 106          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.941e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   61 FYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQG----IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            F+RA +AEF+A  L ++I++ + +G         T G       ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+ RAV Y+I QC+ AI
Sbjct:   10 FWRAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAI 108          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.535e-11
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   61 FYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            F+RA +AEF+AT L ++I++ + +G         T     +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+ AI
Sbjct:   10 FWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAI 106          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.324e-11
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   43 ELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSK--SKSKCSTVG----IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            E    +F+RA IAEF+A  L ++I++   +G +    +    TVG    I  ++ AFG  I  +      +SG H+NPAVT G  L+ ++S+ +AV Y+I QCL A+
Sbjct:    4 EFKKKAFWRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAV 110          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.648e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   58 SFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            +F++A  AEF+A  + + ++V + +    S++    V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCL AI
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAI 127          
The following BLAST results are available for this feature:
BLAST of CX293820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
AQP1_SHEEP2.995e-1240.40Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN3.911e-1240.40Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_CANFA5.108e-1239.39Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP4_MOUSE8.713e-1240.63Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP1_RAT8.713e-1237.86Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_MOUSE8.713e-1237.86Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_PIG1.941e-1139.39Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN2.535e-1139.18Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQPA_RANES4.324e-1136.45Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP4_RAT5.648e-1138.54Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001A07SK FlavSen1 Citrus clementina cDNA clone C05001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293820 ID=CX293820; Name=CX293820; organism=Citrus clementina; type=EST; length=346bp
GATTACACGGAGCCACCTCCGGCGCCGCTCTTCGAGCCCGGCGAATTATC
GTCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCT
TGGTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAA
AGCAAATGTTCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGG
CATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACA
TTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTT
ACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAAGGGCCATAT
back to top