CX293820

Overview
NameCX293820
Unique NameCX293820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:345..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.648e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   58 SFYRAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            +F++A  AEF+A  + + ++V + +    S++    V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCL AI
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAI 130          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   67 RAGIAEFVATFLVLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            RA I+EF+AT + ++    +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL RAV Y + Q L A+
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAV 119          
BLAST of CX293820 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   37 PGELSSWSFYRAGIAEFVATFLVLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLRAI 345
            PGELS     +A +AEF++T + ++    + M  SK       +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL +A+ Y + Q L ++
Sbjct:   11 PGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSV 115          
The following BLAST results are available for this feature:
BLAST of CX293820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
AQP4_NOTAL5.648e-1138.54Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
TIP31_MAIZE9.634e-1138.30Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP12_MAIZE9.634e-1135.24Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05001A07SK FlavSen1 Citrus clementina cDNA clone C05001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293820 ID=CX293820; Name=CX293820; organism=Citrus clementina; type=EST; length=346bp
GATTACACGGAGCCACCTCCGGCGCCGCTCTTCGAGCCCGGCGAATTATC
GTCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCT
TGGTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAA
AGCAAATGTTCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGG
CATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACA
TTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTT
ACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAAGGGCCATAT
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