CX293823
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15 Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 KKL Q E +E + +K+ + KKEF ++++K +QS+ +IG+ L +D IV +++G Y V S +D+E L V L + ++ LP E D + + + +V Y+ +GG+ Q +E+RE++ELPL + E Sbjct: 45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15 Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 KKL Q E +E + +K+ + KKEF ++++K +QS+ +IG+ L +D IV +++G Y V S +D+E L V L + ++ LP E D + + + +V Y+ +GG+ Q +E+RE++ELPL + E Sbjct: 45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15 Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 KKL Q E +E + +K+ + KKEF ++++K +QS+ +IG+ L +D IV +++G Y V S +D+E L V L + ++ LP E D + + + +V Y+ +GG+ Q +E+RE++ELPL + E Sbjct: 45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15 Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 KKL Q E +E + +K+ + KKEF ++++K +QS+ +IG+ L +D IV +++G Y V S +D+E L V L + ++ LP E D + + + +V Y+ +GG+ Q +E+RE++ELPL + E Sbjct: 45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.775e-15 Identity = 43/129 (33.33%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 81 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 +K+ R K+E + ++++K +QSV +IG+ L P+D IV +++G YVV S +D+E L V L + ++ LP + D + M + +V+Y+ VGGL Q +E+RE++ELPL+ + Sbjct: 68 IKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 3.027e-15 Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 3 Query: 36 KKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 +++ H +E S E L+ +K+ + + L+ ++ IG + +D++ IV + + P Y V S VDKE L G V+L T++I+ L + DP+V M + SYS +GGL QI+E++ES+ELPL +PE Sbjct: 63 ERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPE 206
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.163e-15 Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 3 Query: 15 NAMTEYRKKLLQHK----EIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 N + K+ LQ K E+ESR+ + +ENL+ K E +L ++ I+G V+ + +++VK+S+GP ++V V+ + L G RV L+ TLT++ LP D M ++ NV Y +GGL Q++E+RE +ELPL +PE Sbjct: 33 NLKNDLLKEELQEKARIAELESRILKLELEKKELERENLQLMK-ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPE 194
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 6.744e-15 Identity = 45/145 (31.03%), Postives = 79/145 (54.48%), Query Frame = 3 Query: 36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 KKL Q E +E + +K+ + KKEF ++++K +QS+ +IG+ L +D IV +++G Y V S +D+E L V L + ++ LP D + + + +V Y+ +GG+ Q +E+RE++ELPL + E Sbjct: 45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.807e-15 Identity = 46/158 (29.11%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 15 NAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 N + Y +K+ ++ E + +NLR + + N ++++ LQ G +GEV++ + +++VK +YVV +D +++ RV L + +++ LP +VDP+V M+ E + +Y VGGL QI+E++E IELP+ +PE Sbjct: 15 NIVQYYTQKI---QDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPE 169
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14 Identity = 41/136 (30.15%), Postives = 77/136 (56.62%), Query Frame = 3 Query: 60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467 IE + VK+ L+ ++E + ++++K +QSV +IG+ + +D IV +++G Y V S +++E L V LD + ++ LP E D + + + +V+Y+ +GG Q +E+RE++ELPL + E Sbjct: 49 IEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 184 The following BLAST results are available for this feature:
BLAST of CX293823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX293823 ID=CX293823; Name=CX293823; organism=Citrus clementina; type=EST; length=469bpback to top |