CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.381e-29
Identity = 60/146 (41.10%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GK+ L++RF +  F     STIG  F  +T+ +    +K ++WDTAGQER+ ++   YYRGA   I+VYDIT++ SFE  + W++ ++   +  +   L GNK D+   RKV  E+A+  A+E+ + F ETSAK++
Sbjct:   10 KLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 7.028e-29
Identity = 60/150 (40.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:   93 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            ++  K++LLGD G GK+  +++F  G F+     +T+G  F ++ + V+   VK +IWDTAGQER+ S+   YYR A A +++YDITN++SF+  + W+ E+      ++V+ L GNKAD+   R + +E+ +  A+E G+ F+ETSAKT
Sbjct:   27 DLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKT 176          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.179e-29
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTAT 545
            KLVL+GD   GK+ +V RF  G F E Q STIG  F  +TL +    VK +IWDTAGQER+ ++   YYR A  AI+ YDIT ++SF     W+++++     N+V  L GNK+DL + R+V+  EAQ+ A+  + L  +ETSAK ++
Sbjct:   20 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.179e-29
Identity = 62/145 (42.76%), Postives = 93/145 (64.14%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            K++L+GD   GK+ +V  F  G + E Q++TIG  F  ++L ++   VK ++WDTAGQER+ ++   YYR A AAII YD+T +++FE    W+ E++  G  N+V+ L GNK DL + R V  E+A   A++ GL   +ETSAK
Sbjct:   19 KIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAK 163          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.199e-28
Identity = 61/144 (42.36%), Postives = 96/144 (66.67%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER+ ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D ++ R VTA++ +A A+E G+ F+E+SAK
Sbjct:   22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAK 164          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.199e-28
Identity = 60/146 (41.10%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA--TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++L+G+ G GKSS+++RF    F +    T+G  F  +T+   +   TVK ++WDTAGQER+ S+   +YRG+   I+VYD+T+  SFER K WV+++       M++ L GNK+D++  RKVT E+ Q  A++    F+E SAK
Sbjct:    8 KIILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAK 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.199e-28
Identity = 59/146 (40.41%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GK+ L+ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYDITN+ SF+  K W++ ++   + ++   + GNK D+ D R+V+ E  +  A + G+ F+ETSAK++
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.199e-28
Identity = 65/146 (44.52%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRFV   F   Q +TIG  F   ++A++   VK  IWDTAGQER+ +L P YYRGA   I VYD+T+++SFE+   W+QE+     N N++  +  NK D+ + R VT EE   +A+ +   F+E SAKT
Sbjct:   13 KILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQEVDTYCTNDNIIKMMVANKIDMPN-RVVTREEGLKFAKRHRTLFIEASAKT 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K + +GD G GKSS++LRF +  F E   STIG  F  +T+ +    +K +IWDTAGQER+       YRG  A ++VYD+T+Q SFE   KW+QE++     N++  + GNK+D++  + V    AQ +A    + F ETSAK A
Sbjct:   10 KFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQA 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 67/158 (42.41%), Postives = 101/158 (63.92%), Query Frame = 3
Query:   72 MATTGN-KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            + +TG+  ++  K++L+GD G GK+ L++RF  G F+     ST+G  F ++ L V+   VK +IWDTAGQER+ S+   YYR A A +++YDITN+ SF+  + W+ E+Q     ++V+ L GNK D    R V  E+ +  A+E GL FMETSA+T
Sbjct:   57 LGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSART 214          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_RAT5.381e-2941.10Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB37_HUMAN7.028e-2940.00Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB43_HUMAN9.179e-2944.59Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB19_HUMAN9.179e-2942.76Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
SEC4_YEAST1.199e-2842.36Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RABC_DICDI1.199e-2841.10Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB8B_HUMAN1.199e-2840.41Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB18_CAEEL1.199e-2844.52Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]
RABA_DICDI1.566e-2841.78Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB26_MOUSE1.566e-2842.41Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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