CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KL+L+GD   GKS  +LRF    +++   STIG  F  +T+ V   TVK +IWDTAGQER+ ++   YYRGA   IIVYDIT+  SF   K+W+ E+    N ++   L GNK DL + R V    AQAYAQE G+ F+ETSAK + NV +
Sbjct:   10 KLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEE 160          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            KL+L+GD G GKS L+LRF    ++E   STIG  F  +T+  +  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+ E+    + N+   L GNK DL + R V+ E  +A A E G+ F+ETSAK ATNV
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNV 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 68/156 (43.59%), Postives = 101/156 (64.74%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 68/156 (43.59%), Postives = 101/156 (64.74%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 68/156 (43.59%), Postives = 101/156 (64.74%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33
Identity = 70/149 (46.98%), Postives = 97/149 (65.10%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK+DL   + V    A+ YA + G+ F+ETSAK ATNV
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNV 161          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33
Identity = 67/156 (42.95%), Postives = 101/156 (64.74%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            G +    K+V++GD   GKS+L+ R+ + +F    ++TIG  F +Q++ +    VK +IWDTAGQER+ ++   YYRGA  A++VYDIT + +FE   +W+ EL+   +  +   L GNK DL + R V+ EE +A A+E GLFF+ETSA  +TNV
Sbjct:    7 GREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNV 162          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.708e-33
Identity = 68/150 (45.33%), Postives = 98/150 (65.33%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            K+VL+GD G GKS+L+ RF   +F    +STIG  F ++T+ V +  +K +IWDTAGQERY ++   YYRGA  A+IVYDI+  +S+E    W+ EL+   + N+ + L GNK+DL   R V  +EA+ +A EN + F ETSA  + NV+
Sbjct:   15 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVD 164          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.708e-33
Identity = 76/168 (45.24%), Postives = 108/168 (64.29%), Query Frame = 3
Query:   57 RSEHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            R+  P A      +  KLVLLG    GKSSL LR+VK  F      T+G AFF++ + V   ++K EIWDTAGQE+YHS+  +Y+RGA AA++VYDIT + SF +A++W+++L+ + +P  V+  L GNK DL   R+VT +E + +A    L FMETSAK    V++
Sbjct:    6 RTPQPRAAPSQPRV-FKLVLLGSGSVGKSSLALRYVKNDFKSILP-TVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSE 171          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 64/150 (42.67%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            K+V++GD   GKS+L+ RF + +F E  ++TIG  F ++++ +++ T+  + WDTAGQER+ ++   YYRGA  A+IVYDIT++ SF+   +W+ EL+     ++++ + GNK+DL  +R+V  +EAQA+A+ N + F+ETSA  +TNVN
Sbjct:   12 KIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVN 161          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTM1_MAIZE7.665e-3447.68GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RIC1_ORYSJ7.665e-3447.65Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB6A_PONAB7.665e-3443.59Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6... [more]
RAB6A_MOUSE7.665e-3443.59Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB6A_HUMAN7.665e-3443.59Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
RAB1A_LYMST1.307e-3346.98Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
ARA1_ARATH1.307e-3342.95Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPT32_YEAST1.708e-3345.33GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB17_HUMAN1.708e-3345.24Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RB11C_DICDI2.230e-3342.67Ras-related protein Rab-11C OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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