CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.230e-33
Identity = 67/158 (42.41%), Postives = 103/158 (65.19%), Query Frame = 3
Query:   78 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            T  + N   K+VL+G+ G GK++L+ RF + +F     +TIG  F ++T+ +  A VK +IWDTAG ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +V+ L GNK+DL  AR+V  EEA+ +A+ NGL F+ETSA  +TNV
Sbjct:    5 TEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNV 162          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 64/149 (42.95%), Postives = 104/149 (69.80%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++T+     T+K ++WDTAGQERY ++   YYRGA  A++VYDI  QA+++  ++W+ EL+   + N+ + L GNK+DL   R+V+ +EA+ +++++ L F+ETSA  ++NV
Sbjct:   15 KIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNV 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 66/153 (43.14%), Postives = 101/153 (66.01%), Query Frame = 3
Query:   93 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            N   K+VL+G+ G GK++L+ RF + +F     +TIG  F ++T+ +  A VK +IWDTAG ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +V+ L GNK+DL  AR+V  EEA+ +A+ NGL F+ETSA  +TNV
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNV 162          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 71/162 (43.83%), Postives = 109/162 (67.28%), Query Frame = 3
Query:   75 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            +T   +   +KLVLLG    GK+SL LR++K  F      T+G AFF++ L +  +++K EIWDTAGQE+Y S+  +Y+RGA AA++VYDIT + SF +A++W+++L+ +  P  +V+ L GNK DL + R+VT +E + +A+   L FMETSAK    V++
Sbjct:   11 STASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLP-TVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSE 171          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 65/149 (43.62%), Postives = 97/149 (65.10%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            K+V++GD   GKS+L+ R+ + +F    ++TIG  F +Q++ ++   VK +IWDTAGQER+ ++   YYRGA  A++VYDIT  ++FE   +W+ EL    +  +   L GNK DL   R V+ EE ++ A+  GLFFMETSA  +TNV
Sbjct:   14 KIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNV 162          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 69/149 (46.31%), Postives = 97/149 (65.10%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+ E+    + N+   L GNK+DL   + V  + A+A+A E G+ F+ETSAK ATNV
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNV 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 69/162 (42.59%), Postives = 107/162 (66.05%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNV 551
            M+ +G      K+V LG+ G GK+SL+ RF+   F +  ++TIG  F S+T+ ++D T++ ++WDTAGQER+ SL P Y R +  AIIVYDIT + SFE   KW+++++  +G+ N+++ + GNK+DL D R+++ EE +  A+  G   FMETS K   NV
Sbjct:    1 MSRSGKSLTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNV 162          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 67/150 (44.67%), Postives = 101/150 (67.33%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFER-AKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            K++++GD G GKSSL+LRF    + E   STIG  F  +T+ +++ T+K +IWDTAGQER+ ++   YYRGA   I VYD+TN+ SF+   + W+Q++      N+   L GNK DL+D+R V A+EA+  A++N + ++E SAKT +NV
Sbjct:    9 KIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNV 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 69/149 (46.31%), Postives = 96/149 (64.43%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+ E+    + N+   L GNK+DL   + V    A+A+A E G+ F+ETSAK ATNV
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNV 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 67/158 (42.41%), Postives = 102/158 (64.56%), Query Frame = 3
Query:   78 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            T  + N   K+VL+G+ G GK++L+ RF + +F     +TIG  F ++T+ +  A VK +IWDTAG ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +V+ L GNK+DL  AR+V  EEA  +A+ NGL F+ETSA  +TNV
Sbjct:    5 TDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNV 162          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_HUMAN2.230e-3342.41Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RB11A_DICDI2.913e-3342.95Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB25_RABIT2.913e-3343.14Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB17_MOUSE3.804e-3343.83Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]
ARA4_ARATH3.804e-3343.62Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
YPTV1_VOLCA4.968e-3346.31GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPT6_YEAST4.968e-3342.59GTP-binding protein YPT6 OS=Saccharomyces cerevisi... [more]
RAB1_THEAN4.968e-3344.67Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
YPTC1_CHLRE6.489e-3346.31GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB25_MOUSE6.489e-3342.41Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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