CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.468e-48
Identity = 104/166 (62.65%), Postives = 122/166 (73.49%), Query Frame = 3
Query:   75 ATTGNKN---INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQENGLFFMETSAKTATNVND 557
            + T  KN   IN KLVLLGD   GKSSLVLRFVK QF +++ESTIGAAF +QTL +++ T VK EIWDTAGQERY SLAPMYYR A  AI+VYDIT  AS E+AK W++ELQ Q    +V+ALAGNK DL   R+ V   +A+AYA E  L F ETSAKTA NVN+
Sbjct:    3 SNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNE 168          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 90/154 (58.44%), Postives = 112/154 (72.73%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD---ARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLVLLG+   GKSS+VLRFV   F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER+ SLAPMYYR A AA++VYD+T   SF +A+ WV+EL  Q + ++++AL GNK D+L     RKV  EE +  A+E GL F ETSAKT  NVND
Sbjct:    9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 162          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.483e-42
Identity = 85/151 (56.29%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A N+ +
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEE 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.483e-42
Identity = 85/151 (56.29%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A N+ +
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.647e-42
Identity = 85/151 (56.29%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A N+ +
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.104e-40
Identity = 82/151 (54.30%), Postives = 107/151 (70.86%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+ +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G PN+V+A+AGNK DL+D R+V   +A+ YA      F+ETSAK A N+N+
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININE 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.480e-40
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQE + +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G PN+V+A+AGNK DL+D R+V   +A+ YA      F+ETSAK A N+N+
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININE 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 9.348e-40
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+ +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G P++V+A+AGNK DL D R+V   +A+ YA      F+ETSAK A N+N+
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.914e-39
Identity = 89/180 (49.44%), Postives = 112/180 (62.22%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--------DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD--------------------ARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLVLLGD   GKSS+V RFVK  F E +ESTIGAAF SQ++ ++        D  +KFEIWDTAGQERY SLAPMYYR A AA++VYDIT + S ++A+ WV EL+ + G+ ++V+ L GNK DL                       R ++ EEA+ YAQE GL F E SAKT   V +
Sbjct:    5 KLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKE 184          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.763e-38
Identity = 75/151 (49.67%), Postives = 107/151 (70.86%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K VL+GD G GKS+L++RF + +F    +STIG  F ++ + +++  +K +IWDTAGQERY ++   YYRGA  A+IVYDIT Q+SF+   +W++EL+   + N+V+ L GNK DLL  R V+ EEAQA+A EN L F+ETSA  A+NV +
Sbjct:   12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEE 162          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT5_SCHPO5.468e-4862.65GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
VPS21_YEAST4.332e-4558.44Vacuolar protein sorting-associated protein 21 OS=... [more]
RAB31_RAT4.483e-4256.29Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE4.483e-4256.29Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB31_HUMAN7.647e-4256.29Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RB22A_HUMAN1.104e-4054.30Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RB22A_CANFA5.480e-4053.64Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RB22A_MOUSE9.348e-4053.64Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
YPT52_YEAST7.914e-3949.44GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
YPT3_SCHPO1.763e-3849.67GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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