CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.394e-19
Identity = 52/151 (34.44%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            +LV++G  G GKS+L ++F++  F+   + TI  ++  Q + ++D   + +I DTAGQE + ++   Y R     ++V+ +T++ SFE   K+ ++ L+ +      M L GNKADL   R+VT EE Q  A++  + +ME SAK   NV+
Sbjct:   16 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVD 165          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.394e-19
Identity = 55/159 (34.59%), Postives = 90/159 (56.60%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            MA  G   I  KLVL+GD G GK++ + R + G+F +   +T+G    +     N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D  KV A+    + ++N L + + SAK+  N
Sbjct:    1 MAGQGKPQIQFKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDIKD-MKVKAKPILFHRKKN-LQYYDISAKSNYN 156          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.394e-19
Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT+  SF+  +++ ++ L+ + + ++   L GNK DL D RKV   E Q  AQ+  + ++ETSAKT  NV+
Sbjct:   13 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVD 162          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 49/161 (30.43%), Postives = 98/161 (60.87%), Query Frame = 3
Query:   81 TGNKNIN-AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            +G KN N  KL ++GD G GK+++ ++F+   F+ + + TI  ++  Q + ++D     +I DTAGQ+   ++   + R     ++VY +T+++SF++   + +++ +   + ++ + + GNK+DL D R+VT +E +  A+  G+ FME SAKT +N+ +
Sbjct:    2 SGYKNNNLVKLCIMGDGGVGKTAVTIQFISNHFVHYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEE 161          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 52/151 (34.44%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            KLV++G  G GKS L ++ ++  F++  + TI  ++  Q + +++     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +      M + GNK DL   R+VT +E +A A+  G  F+ETSAK+  NV+
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVD 159          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K+ +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N
Sbjct:    4 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYN 155          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB6A_RAT (Ras-related protein Rab-6A (Fragment) OS=Rattus norvegicus GN=Rab6a PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  267 TAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            TAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV
Sbjct:    1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 95          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 56/166 (33.73%), Postives = 90/166 (54.22%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVND 557
            T +K    KL+++GD+G GK+S++ R+V   F     +TIG  F  + L  +  TV + ++WD AGQER+ ++  +YYR A  A IV+D+T  A+FE   KW  +L ++     G P  V+ LA       D       +   + +E+G   + ETSAK   N+++
Sbjct:    3 TPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDE 168          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.083e-19
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNV 551
            K+V+LG  G GK+SL +RFV G F+E  + TI   +           +  EI DT+G ERY ++  +Y R A A ++VY IT++ S    E  K ++ +++ +    + M + GNK DL D R V  EE +A  ++ G+  F+ETSAK   N+
Sbjct:    5 KVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAKIDMNI 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RALA_HUMAN (Ras-related protein Ral-A OS=Homo sapiens GN=RALA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.083e-19
Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A++  + ++ETSAKT  NV+
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRAS2_HUMAN2.394e-1934.44Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RANT_RAT2.394e-1934.59GTP-binding nuclear protein Ran, testis-specific i... [more]
RALA_DROME2.394e-1935.10Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RASX_DICDI3.126e-1930.43Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RASL_COLTR3.126e-1934.44Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RAN_SALSA3.126e-1934.19GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAB6A_RAT3.126e-1945.26Ras-related protein Rab-6A (Fragment) OS=Rattus no... [more]
RAB38_MOUSE3.126e-1933.73Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAPC_DICDI4.083e-1936.60Ras-related protein rapC OS=Dictyostelium discoide... [more]
RALA_HUMAN4.083e-1935.10Ras-related protein Ral-A OS=Homo sapiens GN=RALA ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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