CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.083e-19
Identity = 54/158 (34.18%), Postives = 87/158 (55.06%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVND 557
            KL+++GD+G GK+S++ R+V   F     +TIG  F  + L  +  TV + ++WD AGQER+ ++  +YYR A  A IV+D+T  A+FE   KW  +L ++     G P  V+ LA       D       +   + +E+G   + ETSAK   N+++
Sbjct:   11 KLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDE 168          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.333e-19
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  FI+  + TI  ++  Q + +++ T   +I DTAGQE Y ++   Y R     + VY IT+++SF+    + ++ L+ +    + M + GNK DL   R+VT  E Q  A+  G  F+ETSAK   NV +
Sbjct:    5 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQ-VTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEE 155          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.333e-19
Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++F++  FIE  + TI  ++  Q   V++ T   +I DTAGQ+ Y ++   Y R     + VYD+T++ SFE      ++ ++ + N  + + L GNK DL + R+VT  E    A+   + F+ETSAK   NV++
Sbjct:    8 KLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIEDSYRRQC-QVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDE 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAS1_NEUCR (Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.333e-19
Identity = 54/152 (35.53%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS L ++ ++G F++  + TI  ++  Q    N+  +  +I DTAGQE Y ++   Y R     ++V+ I ++ SFE  + + Q+ L+ +   +  M + GNK DL   R V+ +E QA A E G  ++ETSAKT  NV +
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQGHFLDEYDPTIEDSYRKQCTIDNEVAL-LDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMIIVGNKYDLRGERVVSEQEGQALAAEFGTKYIETSAKTQHNVEN 160          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 53/151 (35.10%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A +  + ++ETSAKT  NV+
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 165          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 53/151 (35.10%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A +  + ++ETSAKT  NV+
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 165          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 53/151 (35.10%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A +  + ++ETSAKT  NV+
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 165          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 49/154 (31.82%), Postives = 84/154 (54.55%), Query Frame = 3
Query:   90 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            + +  K+ L+GD G GK++ + R + G+F +   +T+GA     T   +   V KF +WDTAGQE+   L  +YY GA+ AI  +D+T++ + +   +WV+E QA       + +  NK D+ + +K++ +      +     + E SAKTA N
Sbjct:    4 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 48/158 (30.38%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   87 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            NKN   +L ++GD G GK+++  +F+   F+ + + TI  ++  Q + V+D +   +I DTAGQ+   ++   + R     ++VY IT ++SF +   + +++ +     ++ + + GNK+DL++ R+VT  E +  AQ  G+ FME SAK  +N+++
Sbjct:   29 NKNNIVQLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIEDSYRKQ-ICVSDKSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQVTYHEGKELAQRLGMSFMEVSAKNRSNIDE 185          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 52/161 (32.30%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   84 GNKNI--NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            GNK+     K+V++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D     +I DTAGQE Y ++   Y R     ++VY +T++ SF+    + Q++Q   + + + + + GNK DL + R+V+ E+    A++    F+ETSAK A NV++
Sbjct:    3 GNKSTIREYKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYRKQVV-IDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDE 162          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB38_HUMAN4.083e-1934.18Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RASG_DICDI5.333e-1934.87Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RASB_DICDI5.333e-1935.53Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RAS1_NEUCR5.333e-1935.53Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 S... [more]
RALA_SAGOE6.965e-1935.10Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT6.965e-1935.10Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE6.965e-1935.10Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
GSP1_ENCCU6.965e-1931.82GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RASV_DICDI9.097e-1930.38Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RAS1_YEAST9.097e-1932.30Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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