CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB40B_HUMAN (Ras-related protein Rab-40B OS=Homo sapiens GN=RAB40B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 49/151 (32.45%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +L+GD   GK  ++     G          G  + + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   I+VYDI N+ SF+   +W++E+     P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+ +
Sbjct:   16 KFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITE 165          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 50/152 (32.89%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS L ++ ++  F++  + TI  ++  Q + +++     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +      + + GNK DL   R+V+ +E Q  A + G  F+ETSAK+  NV++
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLEGERQVSKQEGQQLADDFGCKFIETSAKSRINVDN 160          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAPA_DISOM (Ras-related protein O-Krev OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 56/153 (36.60%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVND 557
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D R V  E+ Q  A++ N   F+E+SAK+  NVN+
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQPCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNE 156          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RABM_DICDI (Ras-related protein RabM OS=Dictyostelium discoideum GN=rabM PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYA---QENGLF----FMETSAKTATNVND 557
            K++ LGD   GK+S+   FV G++ E  E T+  +F+S+TL + +  V   +WDT  QER++ L+P+YYR +    + +DI N+ SF+   KW+ E +      +   L G K D+    K ++ E  + +    ++ G+     + ETSAK + N+ +
Sbjct:    7 KIITLGDSYVGKTSVFNNFVTGKY-EINECTVSPSFYSKTLTIENEPVILNVWDTCSQERFNGLSPIYYRWSNCYTLCFDIHNEKSFKNLDKWMDEARKFCIGKVPFVLIGTKKDIPRTDKSISKERIEQWCKNIEDQGIIDRVHYFETSAKFSQNITE 164          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 50/152 (32.89%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS L ++ ++  F++  + TI  ++  Q + ++D     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +      + + GNK DL   R V+ +E ++ A++ G  F+ETSAK+  NV +
Sbjct:   10 KLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIEESYRKQCV-IDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQEGESLARQFGCKFIETSAKSRINVEN 160          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 50/152 (32.89%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS L ++ ++  F++  + TI  ++  Q + ++D     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +      + + GNK DL   R V+ +E ++ A++ G  F+ETSAK+  NV +
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSEQEGESLARQFGCKFIETSAKSRINVEN 160          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 51/159 (32.08%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADL----LDARKVTAEEAQAYAQENGLF----FMETSAKTATNVND 557
            K++ LGD   GK+SL   +V G++   +  +IG  +F + L V +  V   +WDT GQER+ + +P Y+RGA    + +DI N+ SF    KW+ E+      N+   L G K+D+        K   E+     ++ G+     + ETSAK + NV +
Sbjct:    9 KIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTE 167          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB36_MOUSE (Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  102 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKTATNV 551
            +K+V++GD+  GK+SL+ R  K  F    ++TIG  F  +   +       +IWDTAGQE++  +A  YYRGA   I  +D+T+  + E  ++W++++  +    +  + L G K DLL        EA+A   A E    +   SAKT  NV
Sbjct:   58 SKVVVVGDLYVGKTSLIHRLCKNVFDHDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDVLRENEAGSCFIFLVGTKKDLLSGAACEQAEAEAVHLANEMQAEYWSVSAKTGENV 210          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 52/148 (35.14%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            KLVL+GD G GK++ V R + G+F +   +TIG          N   +KF++WDTAGQE++  L   YY  A   II++D+T++ +++    W ++L  +   N+ + L GNK D+ + RKV A+    + ++N L + + SAK+  N
Sbjct:    9 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTITFHRKKN-LQYYDISAKSNYN 153          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 52/148 (35.14%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            KLVL+GD G GK++ V R + G+F +   +TIG          N   +KF++WDTAGQE++  L   YY  A   II++D+T++ +++    W ++L  +   N+ + L GNK D+ + RKV A+    + ++N L + + SAK+  N
Sbjct:    9 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTITFHRKKN-LQYYDISAKSNYN 153          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB40B_HUMAN3.457e-1832.45Ras-related protein Rab-40B OS=Homo sapiens GN=RAB... [more]
RAS_BOTFU3.457e-1832.89Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RAPA_DISOM3.457e-1836.60Ras-related protein O-Krev OS=Discopyge ommata PE=... [more]
RABM_DICDI3.457e-1831.45Ras-related protein RabM OS=Dictyostelium discoide... [more]
RAS_LACBI4.515e-1832.89Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RAS_EMENI4.515e-1832.89Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
RABL_DICDI4.515e-1832.08Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAB36_MOUSE4.515e-1833.33Ras-related protein Rab-36 OS=Mus musculus GN=Rab3... [more]
GSP1_CANGA4.515e-1835.14GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
GSP1_ASHGO4.515e-1835.14GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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