CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 55/153 (35.95%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVND 557
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ + L GNK DL D R V  E+ Q  A++ N   F+E+SAK+  NVN+
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNE 156          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            KLVL+GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE++  L   YY     AII++D+T + +++    W ++L A+   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N
Sbjct:   11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-ARVCENIPIVLCGNKVDVKD-RKVKAKTITFHRKKN-LQYYDISAKSNYN 155          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            K+V+LGD  +GK+SL   F +  F +  + TIG  FF + + +  +  V  +IWD  GQ     +   Y  GA   ++VYDITN  SFE  + W   V+++  +     ++AL GNK DL   R +  E+   + QENG      SAKT  +V
Sbjct:   14 KIVVLGDGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 166          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB28_HUMAN (Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            K+V+LGD  +GK+SL   F +  F +  + TIG  FF + + +  +  V  +IWD  GQ     +   Y  GA   ++VYDITN  SFE  + W   V+++  +     ++AL GNK DL   R +  E+   + QENG      SAKT  +V
Sbjct:   14 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 166          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 46/173 (26.59%), Postives = 86/173 (49.71%), Query Frame = 3
Query:   54 LRSEHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-----NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            + +  P      K++  K++ +G+   GKS ++ R+ + +F+    +TIG  +    + V D  +K  I+D AG   ++ +   +Y+     I+VYD+  + SF+    W+ E++    P     N+V A+  NK D    R V   E + +A+  G  + ETSA+T   +N+
Sbjct:    1 MEASMPKRKEPGKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINE 173          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: DJ27A_XENLA (DnaJ homolog subfamily C member 27-A OS=Xenopus laevis GN=dnajc27-A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 46/161 (28.57%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   90 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV----QELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +  K++ +G+   GKS ++ R+ + +F+   ++TIG  +    + + D  +K  I+D AG   ++ +   +Y+     I+VYD+ ++ +FE    W+    QEL  QGN  N+V A+  NK D    R V   E + +++  G  + ETSA++   +N+
Sbjct:   13 KALRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVDESEGRLWSESKGFLYFETSAQSGEGINE 173          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 50/152 (32.89%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+V+LG  G GKS++ ++F+  QF ++ + TI  A+ +Q + +++     +I DTAGQ  + ++   Y RG    II Y +T++ SF+ A K+ + + Q +    + + L GNK DL   R+V+ EE    A++    F ETSA     ++D
Sbjct:   22 KVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMTLARDYNCAFFETSAALRFGIDD 172          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB40L_HUMAN (Ras-related protein Rab-40A-like OS=Homo sapiens GN=RAB40AL PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 50/149 (33.56%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            K +L+GD   GKS ++     G          G  + + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   I+VYDI N+ SFE   +W+++++    P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+
Sbjct:   16 KFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNI 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB40A_HUMAN (Ras-related protein Rab-40A OS=Homo sapiens GN=RAB40A PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 50/149 (33.56%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            K +L+GD   GKS ++     G          G  + + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   I+VYDI N+ SFE   +W+++++    P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+
Sbjct:   16 KFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNI 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KLV++GD G GKS+L ++F +  F+   + TI  ++   T   N   +  ++ DTAGQE + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RK+T E+ +  A ++ + ++ETSAK
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAK 158          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_CYPCA5.896e-1835.95Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RAN_CAEEL5.896e-1835.14GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RAB28_PONAB5.896e-1835.29Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
RAB28_HUMAN5.896e-1835.29Ras-related protein Rab-28 OS=Homo sapiens GN=RAB2... [more]
DJC27_BOVIN5.896e-1826.59DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]
DJ27A_XENLA5.896e-1828.57DnaJ homolog subfamily C member 27-A OS=Xenopus la... [more]
RIT2_RAT7.701e-1832.89GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
RB40L_HUMAN7.701e-1833.56Ras-related protein Rab-40A-like OS=Homo sapiens G... [more]
RB40A_HUMAN7.701e-1833.56Ras-related protein Rab-40A OS=Homo sapiens GN=RAB... [more]
RASM_HUMAN7.701e-1834.48Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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