CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB32_HUMAN (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 50/158 (31.65%), Postives = 90/158 (56.96%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVND 557
            K++++G++G GK+S++ R+V   F +   +TIG  F  + L  +  T V+ ++WD AGQER+ ++  +YY+ A  A +V+DI+  ++FE   KW  +L ++     G+P   + LA NK D       +  +   + +E+G   + ETSAK   N+ +
Sbjct:   27 KVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA-NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEE 183          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 49/148 (33.11%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            KLVL+GD G GK++ V R   G+F+    +T+G        A +   ++F++WDTAGQE++  L   YY      II++D+T++ +++    W ++L  +   N+ + L GNK D+ + RKV A+    + ++N L + + SAK+  N
Sbjct:    9 KLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTITFHRKKN-LQYYDISAKSNYN 153          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 46/161 (28.57%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   90 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWV----QELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K++  K++ LG+   GKS ++ R+ + +F+    +TIG  +    + V D  +K  I+D AG   ++ +   +Y+ +   I+VYD+  + SF+    W+    QE+ +Q N  N++  +  NK DL   R V   E + +A+  G  + ETSA++   +N+
Sbjct:   13 KSLRVKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINE 173          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB40B_MOUSE (Ras-related protein Rab-40B OS=Mus musculus GN=Rab40b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 48/151 (31.79%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +L+GD   GK  ++     G          G    + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   ++VYDI N+ SF+   +W++E+     P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+ +
Sbjct:   16 KFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDHKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVVLVYDIANRWSFDGINRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITE 165          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 51/164 (31.10%), Postives = 84/164 (51.22%), Query Frame = 3
Query:   87 NKN-----INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVND 557
            NKN     I+ K++++G +  GK+S++ R+    F    + TIG  F  + L +    V  ++WD AGQER+  +  +Y++ A  A+IV+D T   +F  AK W  ++     N N+   L  NK DLL       E+   + ++N    +  TSAK  T +N+
Sbjct:   19 NKNNDDEAISLKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDYCFNNENLPTILLANKCDLLTPPYTFPEDINTFCEQNRFNKYFYTSAKEDTGINE 182          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 55/153 (35.95%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVND 557
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D R V  E+ Q  A++ +   F+E+SAK+  NVN+
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNE 156          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLVL+GD G GK++ V R   G+F +   +T G    +  L      ++F IWDTAGQE+   L   YY GA AAI+++D+T++ +++   KW ++L  +   N+ + L GNK D  D RKV A +   + ++  L + + SAK+
Sbjct:   13 KLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDL-TRICENIPIVLVGNKVDSKD-RKVKARQI-TFHRKRSLQYYDVSAKS 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            MA  G      K VL+GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE++  L   YY     A+I++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N
Sbjct:    1 MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYN 156          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 50/152 (32.89%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+V+LG  G GKS++ ++F+  QF ++ + TI  A+ +Q + +++     +I DTAGQ  + ++   Y RG    II Y +T++ SF+ A K+ + + Q +    + + L GNK DL   R+V+ EE    A++    F ETSA     ++D
Sbjct:   22 KVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMNLARDYNCAFFETSAALRFGIDD 172          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K+V+LG  G GKS+L ++FV+  F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +     ++VY IT Q++F   +   ++ L+ +   ++ M L GNK DL + R V  E  +  A +    FMETSAK   NVND
Sbjct:    5 KIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVND 155          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB32_HUMAN7.701e-1831.65Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
GSP1_YARLI7.701e-1833.11GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
DJC27_DANRE7.701e-1828.57DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
RB40B_MOUSE1.006e-1731.79Ras-related protein Rab-40B OS=Mus musculus GN=Rab... [more]
RB32C_DICDI1.006e-1731.10Ras-related protein Rab-32C OS=Dictyostelium disco... [more]
RAP1B_RAT1.006e-1735.95Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAN_TETTH1.006e-1736.55GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_DROME1.006e-1732.70GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RIT2_MOUSE1.314e-1732.89GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RAS3_DROME1.314e-1735.53Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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