CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 52/152 (34.21%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + +++ + + + ++ M L GNK D L +R V  ++AQ  A+  G+ F+ETSAKT   V D
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD-LPSRTVDTKQAQELARSYGIPFIETSAKTRQRVED 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 52/152 (34.21%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + +++ + + + ++ M L GNK D L +R V  ++AQ  A+  G+ F+ETSAKT   V+D
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 52/152 (34.21%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK D L AR V   +AQ  A+  G+ ++ETSAKT   V D
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LPARTVETRQAQDLARSYGIPYIETSAKTRQGVED 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   72 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            MA    +N++    KL+++GD G GK++ + R + G+F    E T+G   +      N   ++FE WDTAGQE+Y  L   YY     AII++D+T + ++    +W ++L+ +   N+ + L GNK D + +R++  +   +Y ++  L + E SAK   N
Sbjct:    1 MALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVD-VPSRQIKPKHV-SYHRKKCLQYYEMSAKNNCN 159          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RABT2_DICDI (Ras-related protein RabT2 OS=Dictyostelium discoideum GN=rabT2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 50/155 (32.26%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLA-VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL--QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVND 557
            K+++LGD   GK S++ R+   +F E   S+IG  F  +    VN    K +IWD    ER+ S+   YYRGA   +++YD TNQ SF   + W+ E+  ++  + N  + + GNK DL++  K+   +++ +     +  F   SAK + N+N+
Sbjct:   27 KVLMLGDYKTGKGSVLRRYHYNEF-ELGVSSIGVDFVIRDYGIVNGKYYKIQIWDANSCERFRSITQAYYRGAHGFMLLYDCTNQESFNNLQFWINEIINKSPNSNNSTIVIIGNKCDLVNDIKIDPIKSKLFCDSKSITSFQNVSAKDSININE 180          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 50/158 (31.65%), Postives = 90/158 (56.96%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVND 557
            K++++G++G GK+S++ R+V   F +   +TIG  F  + L  +  T V+ ++WD AGQER+ ++  +YY+ A  A++V+DI+  + FE   KW  +L ++     G+P   + LA NK D          +   + +E+G   + ETSAK   N+++
Sbjct:   29 KVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLA-NKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDE 185          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 50/151 (33.11%), Postives = 84/151 (55.63%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN 554
            KLV++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +      + +  NK DL   R+V   E +  A+  G  F+ETSAK   NV+
Sbjct:   12 KLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVD 161          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KLV++GD G GKS+L ++F +  F+   + TI  ++   T   N   +  ++ DTAGQE + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  A +  + ++ETSAK
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KLV++GD G GKS+L ++F +  F+   + TI  ++   T   N   +  ++ DTAGQE + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  A +  + ++ETSAK
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 50/152 (32.89%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +   +  + +  NK DL   R+V   E +  A+  G  F+ETSAK   NV++
Sbjct:   12 KLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKDQDSFPVIVVANKCDLEYERQVGMNEGRDLAKHFGCKFIETSAKQRINVDE 162          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_MOUSE2.241e-1734.21GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]
RASK_MELGA2.241e-1734.21GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RASH_CHICK2.241e-1734.21GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RAN4_ARATH2.241e-1731.48GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RABT2_DICDI2.241e-1732.26Ras-related protein RabT2 OS=Dictyostelium discoid... [more]
RAB32_PIG2.241e-1731.65Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RAS_LENED2.926e-1733.11Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RASM_RAT2.926e-1734.48Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE2.926e-1734.48Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASL_COPCI2.926e-1732.8924 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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