CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASK_MSVKI (GTPase KRas OS=Kirsten murine sarcoma virus GN=K-RAS PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DT GQE Y ++   Y R     + V+ I N  SFE    + ++L + + + ++ M L GNK D L +R V  ++AQ  A+  G+ F+ETSAKT   V D
Sbjct:    5 KLVVVGASGVGKSALTIQLIQNHFVDEYDPTIQDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQLKRVKDSEDVPMVLVGNKCD-LPSRTVDTKQAQELARSYGIPFIETSAKTRQRVED 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASK_HUMAN (GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 52/152 (34.21%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + +++ + + + ++ M L GNK D L +R V  ++AQ  A+  G+ F+ETSAKT   V D
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVED 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLVL+GD G GK++ V R   G+F +   +T G    +  L      ++F IWDTAGQE+   L   YY GA AAI+++D+T++ +++   KW ++L  +   N+ + L GNK D  D+ KV A +   + ++  L + + SAK+
Sbjct:   13 KLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDL-TRICENVPIVLVGNKVDSKDS-KVKARQI-TFHRKRSLQYYDVSAKS 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 51/148 (34.46%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+  N
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 159          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 51/148 (34.46%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATN 548
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+  N
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 159          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RABT1_DICDI (Ras-related protein RabT1 OS=Dictyostelium discoideum GN=rabT1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 49/155 (31.61%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLA-VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL--QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVND 557
            K+++LGD   GKSS++ R+   +F E   S+IG  F  +    VN    K +IWD    +R+  L   YY+GA   +++YD TNQ SF   + W+ E+  ++  + N  + + GNK DL++  K+   +++ +     +  F   SAK + N+N+
Sbjct:   32 KVIILGDNKTGKSSILRRYHYNEF-ELGVSSIGVDFIKKDYGMVNGKYYKIQIWDVNSCDRFRLLTHSYYKGAHGFMLLYDCTNQESFNNLQFWINEIINKSPNSNNSTIVIIGNKCDLVNGIKIDPIKSKQFCDSKSITSFQNVSAKDSININE 185          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 48/158 (30.38%), Postives = 91/158 (57.59%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVND 557
            K++++G++G GK+S++ R+V   F +   +TIG  F  + L  +  T V+ ++WD AGQER+ ++  +YY+ A  A +V+DI+  ++F+   KW  +L ++     G+P   + LA NK D       +  +   + +++G   + ETSAK   N+++
Sbjct:   25 KVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLA-NKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDE 181          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 52/152 (34.21%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G VG GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + +++ + + + ++ M L GNK   L +R V  ++AQ  A+  G+ F+ETSAKT   V+D
Sbjct:    5 KLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC-ALPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 52/152 (34.21%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + +++ + + + ++ M L GNK D L  R V  ++AQ  A+  G+ F+ETSAKT   V+D
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD-LPTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDD 154          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 51/152 (33.55%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  AR V + +AQ  A+  G+ +++TSAKT   V D
Sbjct:    5 KLVVVGAKGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIKTSAKTRQGVED 154          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_MSVKI2.926e-1734.21GTPase KRas OS=Kirsten murine sarcoma virus GN=K-R... [more]
RASK_HUMAN2.926e-1734.21GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1[more]
RAN_TETPY2.926e-1735.86GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN2_ORYSJ2.926e-1734.46GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI2.926e-1734.46GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RABT1_DICDI2.926e-1731.61Ras-related protein RabT1 OS=Dictyostelium discoid... [more]
RAB32_MOUSE2.926e-1730.38Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RASK_XENLA3.822e-1734.21GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RASK_ORYLA3.822e-1734.21GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RASH_MSVMO3.822e-1733.55GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]

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Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
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