CX293829

Overview
NameCX293829
Unique NameCX293829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            KLV LGD   GK+S++ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R ++ AI+VYDITN+ SF    KW+++++ +   N+V+ L GNK DL D R+V+ EE +A A+E  + F ETSAK   N+
Sbjct:    8 KLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNI 156          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 69/151 (45.70%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 69/151 (45.70%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 69/151 (45.70%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 69/151 (45.70%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++   YYRGAA A++VYDIT ++++     W+ + +   NPN V+ L GNKADL   R VT EEA+ +A+ENGL F+E SAKT  NV D
Sbjct:   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 163          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.441e-34
Identity = 66/149 (44.30%), Postives = 102/149 (68.46%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 551
            KLV LGD   GK+S++ RF+  +F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R ++ A+IVYD+ ++ SF    KW+ E++ +   ++++ L GNK DL+D R+V+ EEA+A A+E  + F+ETSAK   N+
Sbjct:   11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNI 159          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.441e-34
Identity = 66/151 (43.71%), Postives = 98/151 (64.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NM + L GNK DL   R V+ EE + +A+E+GL FME SAKTA NV +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE 158          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.494e-34
Identity = 69/151 (45.70%), Postives = 102/151 (67.55%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD   GKS+L+L+FV  +F    + TIG  F S+++ +ND  +K +IWDTAGQE++ S+   YYRGA  A+IVYDIT + SFE    W+ + +   + ++   L GNKADL   R+V+  EA+ +A++NGL F ETSAKTA NV++
Sbjct:   26 KYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDE 176          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 4.494e-34
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE + S+   YYRG+A A++VYDIT + +F     W+++ ++  N NM + L GNK+D+   R V+ EE + +A ENGL F+ETSAKTA+NV +
Sbjct:    7 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEE 157          
BLAST of CX293829 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.869e-34
Identity = 66/151 (43.71%), Postives = 98/151 (64.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND 557
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NM + L GNK DL   R V+ EE + +A+E+GL FME SAKTA NV +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE 158          
The following BLAST results are available for this feature:
BLAST of CX293829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6_DICDI2.634e-3446.31Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB14_PONAB2.634e-3445.70Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_MOUSE2.634e-3445.70Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN2.634e-3445.70Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.634e-3445.70Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RBH1B_ARATH3.441e-3444.30Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RAB2B_MAIZE3.441e-3443.71Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2B_DICDI4.494e-3445.70Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB2A_DICDI4.494e-3443.05Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB2A_MAIZE5.869e-3443.71Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001B12SK FlavSen1 Citrus clementina cDNA clone C05001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293829 ID=CX293829; Name=CX293829; organism=Citrus clementina; type=EST; length=559bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGT
GAATGACAT
back to top