CX293830

Overview
NameCX293830
Unique NameCX293830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14581 contig Ccv1_Contig14581:79..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.176e-11
Identity = 45/141 (31.91%), Postives = 70/141 (49.65%), Query Frame = 3
Query:    9 ISPSLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCDWYCVTCDLT--TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +  S+S  C+PND   L +   +L N  V  SW   + CC+W  V C+ +  + R+  L +    L G I   +G+L  L  L   +   L G +   I+KL+ L+ L +S   +SG V   +S L  +  L +S N+LSG
Sbjct:   11 VGSSVSQPCHPNDLSALRELAGALKNKSVTESWLNGSRCCEWDGVFCEGSDVSGRVTKLVLPEKGLEGVISKSLGELTELRVLDLSR-NQLKGEVPAEISKLEQLQVLDLSHNLLSGSVLGVVSGLKLIQSLNISSNSLSG 150          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 48/142 (33.80%), Postives = 80/142 (56.34%), Query Frame = 3
Query:    9 ISPSLSDLCNPNDKKVLLKFKKSLNN-PY-VLASWNPKTDCCDWYC-VTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            IS S SD  +  D  +LL+FK S+++ PY  LASW    D C+ +  +TC+     ++ + ++   L G + P + +L ++  L        TG +     KL+ L T+ +S   +SGP+P+FIS+L++L FL+LS N  +G
Sbjct:   16 ISTSRSDSISERD--ILLQFKGSISDDPYNSLASWVSDGDLCNSFNGITCN-PQGFVDKIVLWNTSLAGTLAPGLSNLKFIRVLNLFG-NRFTGNLPLDYFKLQTLWTINVSSNALSGPIPEFISELSSLRFLDLSKNGFTG 153          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 3
Query:   42 NDKKVLLKFKKSLNNPY-VLASWNP--KTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETL------MFHKLPS-----------------LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            N+ K L+  K S +N   +L  W+    +D C W  V CD  +  + SL + + +L G+I P +GDL  L+++      +  ++P                  L G I  +I+KLK L+TL +    ++GPVP  ++Q+ NL  L+L+ N+L+G
Sbjct:   28 NEGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTG 181          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.619e-11
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 3
Query:   57 LLKFKKSLNNPY-VLASWNPK-TDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            L   K SL +P  VL SW+      C W+ VTC+ + N +  + +   +L GQ+  ++G LP L+ L  +   ++TG I   +  L  L +L +   N+SGP+P  + +L  L FL L+ N+LSG
Sbjct:   32 LSALKNSLADPNKVLQSWDATLVTPCTWFHVTCN-SDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYS-NNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSG 154          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 43/141 (30.50%), Postives = 70/141 (49.65%), Query Frame = 3
Query:    3 LCISPSLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +C+    SDL    D++ L+  +  ++   +L  WN     C W  V C+  + R+ +L +    L G +P  +G+L  LETL F +  +L GP+ P  A L  L+ L +     SG +P F+  L N+  + L+ NN  G
Sbjct:   16 ICLVSVTSDL--EADRRALIALRDGVHGRPLL--WNLTAPPCTWGGVQCE--SGRVTALRLPGVGLSGPLPIAIGNLTKLETLSF-RFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLG 149          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = 3
Query:   93 VLASWNPK-TDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHK-----------------------LPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            VL SW+P   + C W+ VTC+   N +  + +   DL GQ+ P++G L  L+ L  +                        L S TGPI  ++ KL  L+ LR++  +++GP+P  ++ +  L  L+LS N LSG
Sbjct:   49 VLQSWDPTLVNPCTWFHVTCN-NENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSG 182          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 3
Query:   57 LLKFKKS---LNNPYVLASW--NPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETL------MFHKLPS-----------------LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            LL+ KKS   +NN  VL  W  +P +D C W  V+C+  T  + +L +   +L G+I P +GDL  L ++      +  ++P                  L+G I  +I+KLK L+ L +    + GP+P  +SQ+ NL  L+L+ N LSG
Sbjct:   30 LLEIKKSFKDVNN--VLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSG 178          
The following BLAST results are available for this feature:
BLAST of CX293830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSKR2_ARATH1.176e-1131.91Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
Y1124_ARATH2.005e-1133.80Probable LRR receptor-like serine/threonine-protei... [more]
ERL1_ARATH2.619e-1130.52LRR receptor-like serine/threonine-protein kinase ... [more]
BAK1_ARATH2.619e-1134.40BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
Y5659_ARATH9.951e-1130.50Probable inactive receptor kinase At5g16590 OS=Ara... [more]
SERK2_ARATH9.951e-1131.11Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
ERECT_ARATH9.951e-1132.45LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC05001C01SK FlavSen1 Citrus clementina cDNA clone C05001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293830 ID=CX293830; Name=CX293830; organism=Citrus clementina; type=EST; length=425bp
GCCTTTGCATTTCCCCTTCACTCTCAGACCTCTGCAACCCAAATGACAAG
AAAGTGCTTCTCAAATTCAAAAAATCTTTGAACAACCCTTACGTTCTAGC
TTCTTGGAACCCAAAAACTGACTGCTGTGACTGGTACTGCGTCACATGCG
ATCTCACCACTAACCGCATCAACTCTCTCACCATCTTCGCCGGAGATCTC
CCCGGCCAGATCCCCCCCGAAGTTGGTGATCTTCCTTACCTCGAAACCCT
AATGTTTCACAAGCTACCCAGCCTCACTGGCCCCATACAACCCGCCATTG
CCAAGCTCAAAAACCTGAAGACGCTACGTATTAGCTGGACAAACATTTCT
GGGCCGGTTCCTGATTTTATCAGCCAACTCACCAACTTAACATTCTTGGA
GCTTTCATTTAACAATCTTTCTGGG
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