CX293831

Overview
NameCX293831
Unique NameCX293831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:115..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 7.029e-15
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            KFFVGGNWKCNGT   +  +V+ LN  ++             +V++  VK+ L   I++AAQN WV KGGAFTGE+S E L
Sbjct:    4 KFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEML 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 9.181e-15
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            KFFVGGNWKCNGT E +  +V  LN  ++             +V++  VK  L   I++AAQN WV KGGAFTGE+S E L
Sbjct:    4 KFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEML 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.181e-15
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  178 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            SS KFFVGGNWK NG KES+ +L+  LN A L            +Y+D  ++ L  RI +AAQN +    GAFTGEIS   +KD
Sbjct:    2 SSRKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSIYLDYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.566e-14
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  178 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            S  KFFVGGNWK NG K+SI +L + LN AKL            +Y+D  ++ L   I++AAQN +    GAFTGEIS   +KD
Sbjct:    2 SGRKFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTIYLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTKVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  178 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            +  +FFVGGNWK NG KES+ +L+S LN A L            +Y+D  ++ L  RI +AAQN +    GAFTGEIS   +KD
Sbjct:    2 AQRRFFVGGNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPSIYLDFARSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+++ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
The following BLAST results are available for this feature:
BLAST of CX293831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPIS_SECCE7.029e-1546.91Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU9.181e-1548.15Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPISA_DANRE9.181e-1547.62Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPISB_DANRE1.566e-1446.43Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_PONAB2.671e-1446.51Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR2.671e-1446.51Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_HUMAN2.671e-1446.51Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_GORGO2.671e-1446.51Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_ORYLA3.489e-1445.24Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_MACMU5.951e-1445.35Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]

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Properties
Property NameValue
Genbank descriptionC05001C03SK FlavSen1 Citrus clementina cDNA clone C05001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293831 ID=CX293831; Name=CX293831; organism=Citrus clementina; type=EST; length=429bp
ATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCTCCACAAA
CTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAGTCTTTTT
CACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAGACCTCGC
CGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCTTTGTTGG
GGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAGCTTGTTT
CGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGTGGTAGCG
CCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAGATAGAAT
TGAGATAGCAGCTCAAAACTCTTGGGTCGGAAAAGGTGGAGCATTTACAG
GAGAAATCAGTGTGGAACAACTGAAAGAT
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