CX293831

Overview
NameCX293831
Unique NameCX293831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+++ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+ + +L+  LN AKL             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K+++ +L++ LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDAKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA S KFFVGGNWK NG K ++ +L++ LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPSRKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.015e-13
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  178 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            SS KFFVGGNWK NG K+S+T+L++ LN  K+            +Y+D  +  L  +  ++AQN +    GAFTGEIS   +KD
Sbjct:    2 SSRKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTIYLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            KF VGGNWK NG K  I ++V++L    L+           +Y+  VK  + D +E+AAQN W    GAFTGEIS   +KD
Sbjct:    4 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKD 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  175 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            A S KFFVGGNWK NG K+++ +L++ LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 APSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA + KFFVGGNWK NG K ++ +L++ LN AKL             YID  +  L  +I +AAQN +    GAFTGEI    +KD
Sbjct:    1 MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVANGAFTGEIGPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            M+ S KFFVGGNWK NG++     L+  L++A             FVY+++V+ SL   I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MSGSRKFFVGGNWKMNGSRADNKVLIHSLSEAHFCGDTEILIAAPFVYLNEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            KFFVGGNWK NG K+S+ +L+  LN AKL            +Y+D  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    5 KFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKD 85          
The following BLAST results are available for this feature:
BLAST of CX293831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPIS_MACFA5.951e-1445.35Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_RAT7.772e-1446.51Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_CANFA7.772e-1445.35Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_BOVIN7.772e-1445.35Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_XENTR1.015e-1342.86Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_BOMMO1.731e-1343.21Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_RABIT2.261e-1344.71Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_PIG2.261e-1344.19Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_SCHJA3.857e-1343.02Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_CHICK5.038e-1345.68Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]

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Properties
Property NameValue
Genbank descriptionC05001C03SK FlavSen1 Citrus clementina cDNA clone C05001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293831 ID=CX293831; Name=CX293831; organism=Citrus clementina; type=EST; length=429bp
ATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCTCCACAAA
CTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAGTCTTTTT
CACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAGACCTCGC
CGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCTTTGTTGG
GGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAGCTTGTTT
CGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGTGGTAGCG
CCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAGATAGAAT
TGAGATAGCAGCTCAAAACTCTTGGGTCGGAAAAGGTGGAGCATTTACAG
GAGAAATCAGTGTGGAACAACTGAAAGAT
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