CX293831

Overview
NameCX293831
Unique NameCX293831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.579e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            KFFVGGN+K NGT +SIT ++++LN AKL+           +Y+   +     ++ ++AQN +    GAFTGE+SVEQL+D
Sbjct:    4 KFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPAIYLVLARQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRD 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.122e-12
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  178 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            S  KFFVGGNWK NG K+S+ +L++ LN  K+            +Y+D  +  L  +I ++AQN +    GAFTGEIS   +KD
Sbjct:    2 SPRKFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPAIYLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.466e-12
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA + KFFVGGNWK NG K+ + +L+  LN A +             YID  +  L  +I +AAQN +    GAFTGEIS   +KD
Sbjct:    1 MAPTRKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.265e-12
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  172 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            M+ S KFFVGGNWK NG+++   KL+  L++A  +           V++ +++ SL   I +AAQN +    GAFTGEIS   ++D
Sbjct:    1 MSGSRKFFVGGNWKMNGSRDDNDKLLKLLSEAHFDDNTEVLIAPPSVFLHEIRKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRD 86          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  181 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            + KFFVGGN+K NGT++ +  +V +LN+A+L+           +Y+D VK +L    +E+AAQN +    GAFTGEIS  QL D
Sbjct:    2 ARKFFVGGNFKMNGTRKDLKAIVDNLNNAQLDPNAEVVIAPPALYLDFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.501e-12
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            KFFVGGN+K NG  ES T ++ +LN A L+           +Y+ Q +      I +AAQN +    GAFTGEISV+QL++
Sbjct:    4 KFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPALYLLQAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLRE 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.117e-11
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  190 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            FFVGGN+K NGTK SI ++V  LN+AKL+            Y+D   + +   ++ + AQN+++   GAFTGE SV+Q+KD
Sbjct:    5 FFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTVSLVKKSQVSVGAQNAYLKASGAFTGENSVDQIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  181 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKD 429
            + +FFVGGN+K NGT+ES++K+V  LN A+L             YI    N    + IE++AQN +    GA+TGEIS EQ+KD
Sbjct:    2 ARQFFVGGNFKMNGTRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALAVNENKQKTIEVSAQNCFDKASGAYTGEISPEQIKD 85          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            KFFVGGNWK NG K+S+ +L+  LN AK+             Y+D  +  +  +  +AAQN +    GAFTGEIS   +KD
Sbjct:    4 KFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLKVDPKFGVAAQNCYKVSKGAFTGEISPAMIKD 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  190 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            FF+GGN+K NGTK SI ++V  LN A +             Y+D  V  +   ++ +AAQN+++   GAFTGE SVEQ+KD
Sbjct:    5 FFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHAVSLNKKAQVSVAAQNAYLKASGAFTGENSVEQIKD 85          
The following BLAST results are available for this feature:
BLAST of CX293831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPIS_PARBA6.579e-1343.21Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_XENLA1.122e-1241.67Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_MOUSE1.466e-1243.02Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_SCHMA3.265e-1239.53Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_NEUCR4.265e-1244.05Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_EMENI9.501e-1243.21Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_ZYGBA2.117e-1143.21Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_DEBHA2.764e-1144.05Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_LATCH3.610e-1141.98Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_KLUMA4.715e-1143.21Triosephosphate isomerase OS=Kluyveromyces marxian... [more]

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Properties
Property NameValue
Genbank descriptionC05001C03SK FlavSen1 Citrus clementina cDNA clone C05001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293831 ID=CX293831; Name=CX293831; organism=Citrus clementina; type=EST; length=429bp
ATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCTCCACAAA
CTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAGTCTTTTT
CACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAGACCTCGC
CGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCTTTGTTGG
GGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAGCTTGTTT
CGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGTGGTAGCG
CCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAGATAGAAT
TGAGATAGCAGCTCAAAACTCTTGGGTCGGAAAAGGTGGAGCATTTACAG
GAGAAATCAGTGTGGAACAACTGAAAGAT
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