CX293833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_DICDI (Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.952e-21 Identity = 44/120 (36.67%), Postives = 76/120 (63.33%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F K+ RVK + FHPT+PW+LASL+SG++ +++Y +T + + PVR F + V G DD I+V++Y + + H+DYIRS+ H P+++++SDD +I++W+W+ Sbjct: 4 KFETKASRVKGLSFHPTRPWILASLHSGSIHLYDYRIKTLLEKFDEHEGPVRGINFHMTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWIVSSSDDMVIRIWNWQ 123 HSP 2 Score: 73.1738 bits (178), Expect = 8.608e-13 Identity = 34/119 (28.57%), Postives = 62/119 (52.10%), Query Frame = 1 Query: 160 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 516 ++F + V+ ++FH TQP ++ + +WNY + ++K +R+ +F WIV SDD IR++++ + + E H Y+ S HP V++AS D+ I++WD Sbjct: 45 EKFDEHEGPVRGINFHMTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWIVSSSDDMVIRIWNWQSRTCIAELNGHNHYVMSALFHPKDDLVVSASLDQTIRIWD 163
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 6.576e-21 Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS+RVK + FHP +PW+LASL+SG + +W+Y T + PVR F + V G DD I+V++Y + H DYIR++ H +P++++ASDD+ I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.588e-21 Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS+RVK + FHP +PW+LASL+SG + +W+Y T + PVR F + V G DD I+V++Y T + H DYIR++ H P++++ASDD+ I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQ 123
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS RVK + FHP +PW+L SL++G + +W+Y T D PVR F ++ V G DD I+V++Y + H DYIR+ H +P++L+ASDD+ I++W+W+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS RVK + FHP +PW+L SL++G + +W+Y T D PVR F ++ V G DD I+V++Y + H DYIR+ H +P++L+ASDD+ I++W+W+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS RVK + FHP +PW+L SL++G + +W+Y T D PVR F ++ V G DD I+V++Y + H DYIR+ H +P++L+ASDD+ I++W+W+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.567e-20 Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F +S R K V FHPTQPW+L SL++G + +W+Y T D PVR F + V G DD + V++Y + + H DY+R H +P++L+ SDD+ I++W+W+ Sbjct: 6 KFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQ 125
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_YEAST (Coatomer subunit alpha OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 8.038e-19 Identity = 41/120 (34.17%), Postives = 69/120 (57.50%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS R K + FHP++PWVL +L+S T+ +W+Y T + + PVR F + V DD I+V+ +T + H DY+R++ H P++++ASDD+ I++W+W+ Sbjct: 6 KFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQ 125 The following BLAST results are available for this feature:
BLAST of CX293833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX293833 ID=CX293833; Name=CX293833; organism=Citrus clementina; type=EST; length=525bpback to top |