CX293833

Overview
NameCX293833
Unique NameCX293833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_DICDI (Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.952e-21
Identity = 44/120 (36.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  K+ RVK + FHPT+PW+LASL+SG++ +++Y  +T  +     + PVR   F   +   V G DD  I+V++Y     +   + H+DYIRS+  H   P+++++SDD +I++W+W+
Sbjct:    4 KFETKASRVKGLSFHPTRPWILASLHSGSIHLYDYRIKTLLEKFDEHEGPVRGINFHMTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWIVSSSDDMVIRIWNWQ 123          

HSP 2 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 34/119 (28.57%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  160 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 516
            ++F +    V+ ++FH TQP  ++      + +WNY  +    ++K     +R+ +F     WIV  SDD  IR++++ +   + E   H  Y+ S   HP    V++AS D+ I++WD
Sbjct:   45 EKFDEHEGPVRGINFHMTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWIVSSSDDMVIRIWNWQSRTCIAELNGHNHYVMSALFHPKDDLVVSASLDQTIRIWD 163          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.576e-21
Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS+RVK + FHP +PW+LASL+SG + +W+Y   T        + PVR   F   +   V G DD  I+V++Y     +     H DYIR++  H  +P++++ASDD+ I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.588e-21
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS+RVK + FHP +PW+LASL+SG + +W+Y   T        + PVR   F   +   V G DD  I+V++Y T   +     H DYIR++  H   P++++ASDD+ I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQ 123          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS RVK + FHP +PW+L SL++G + +W+Y   T        D PVR   F  ++   V G DD  I+V++Y     +     H DYIR+   H  +P++L+ASDD+ I++W+W+
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS RVK + FHP +PW+L SL++G + +W+Y   T        D PVR   F  ++   V G DD  I+V++Y     +     H DYIR+   H  +P++L+ASDD+ I++W+W+
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS RVK + FHP +PW+L SL++G + +W+Y   T        D PVR   F  ++   V G DD  I+V++Y     +     H DYIR+   H  +P++L+ASDD+ I++W+W+
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.567e-20
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  +S R K V FHPTQPW+L SL++G + +W+Y   T        D PVR   F   +   V G DD  + V++Y +   +     H DY+R    H  +P++L+ SDD+ I++W+W+
Sbjct:    6 KFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQ 125          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA_YEAST (Coatomer subunit alpha OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.038e-19
Identity = 41/120 (34.17%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS R K + FHP++PWVL +L+S T+ +W+Y   T     +  + PVR   F   +   V   DD  I+V+  +T   +     H DY+R++  H   P++++ASDD+ I++W+W+
Sbjct:    6 KFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQ 125          
The following BLAST results are available for this feature:
BLAST of CX293833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COPA_DICDI2.952e-2136.67Coatomer subunit alpha OS=Dictyostelium discoideum... [more]
COPA1_ARATH6.576e-2137.50Coatomer subunit alpha-1 OS=Arabidopsis thaliana G... [more]
COPA2_ARATH8.588e-2138.33Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]
COPA_MOUSE2.499e-2037.50Coatomer subunit alpha OS=Mus musculus GN=Copa PE=... [more]
COPA_HUMAN2.499e-2037.50Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=... [more]
COPA_BOVIN2.499e-2037.50Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 ... [more]
COPA_SCHPO5.567e-2035.83Putative coatomer subunit alpha OS=Schizosaccharom... [more]
COPA_YEAST8.038e-1934.17Coatomer subunit alpha OS=Saccharomyces cerevisiae... [more]

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Properties
Property NameValue
Genbank descriptionC05001C06SK FlavSen1 Citrus clementina cDNA clone C05001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293833 ID=CX293833; Name=CX293833; organism=Citrus clementina; type=EST; length=525bp
TATGATGAATTGTCGCAGCCTCTCGAACTTCAAATTGAGGTACGACTGAA
TATCCTCTTATGCTTGAAGCAACTTCAATTTATTCATTAATTATTTTAAT
GCAACTTTATTTAAATGTTTTTTTTTCCTAACTAGCTTAAAATAATTTCC
TGATTCCAGAAAGAATTCATCCAGAAATCTGATAGGGTAAAATCCGTGGA
TTTTCACCCAACTCAACCATGGGTTCTAGCAAGTTTGTACTCAGGAACTG
TGTGTATCTGGAATTACCATTCTCAGACAACTGAGAAGTCTGTCAAGGTC
ACTGACTCACCAGTGAGGACAGCCAAGTTTGTGGCACGAGAGCACTGGAT
CGTTTGTGGTTCCGATGACAAGTTCATACGTGTCTTCGATTATAACACAA
TGGCAAGTGTCAAGGAATTTGAGGCACATGAAGATTACATAAGGTCTCTG
GCTGTCCATCCTACTTTCCCATTCGTGCTGACGGCATCGGATGACAAGCT
TATAAAGCTGTGGGATTGGGAGAAG
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