CX293835

Overview
NameCX293835
Unique NameCX293835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10397 contig Ccv1_Contig10397:6..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293835 vs. ExPASy Swiss-Prot
Match: GSTZ1_DIACA (Glutathione S-transferase 1 OS=Dianthus caryophyllus GN=GST1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 54/164 (32.93%), Postives = 87/164 (53.05%), Query Frame = 2 
Query:   56 ESVKLLGYWASPFALRVKWALKLKGVHYEYVEENL---PNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASQGEEQ----EKAAKARENLK----MLERALEGK--PFFGGDKIGFLDI 508
            + ++L  +  S  A RV+ AL LKG+ +EY   +L    + +P  L+ NP+   +PVLVH    +A+SL II Y++E + +NPLLP+D  +RA     A        P    A  +  EE+    EK + A+ ++K     LE+ L+G    +  GD++G  D+
Sbjct:    7 QKMQLYSFSLSSCAWRVRIALHLKGLDFEYKAVDLFKGEHLTPEFLKLNPL-GYVPVLVHGDIVIADSLAIIMYLEEKFPENPLLPQDLQKRALNYQAANIVTSNIQPLQNLAVLNYIEEKLGSDEKLSWAKHHIKKGFSALEKLLKGHAGKYATGDEVGLADL 169
The following BLAST results are available for this feature:
BLAST of CX293835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GSTZ1_DIACA2.601e-1132.93Glutathione S-transferase 1 OS=Dianthus caryophyll... [more]

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Properties
Property NameValue
Genbank descriptionC05001D02SK FlavSen1 Citrus clementina cDNA clone C05001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293835 ID=CX293835; Name=CX293835; organism=Citrus clementina; type=EST; length=514bp
ATTCATTTAGATATTATCACGCGCTGCTTTTGCTTGGCGAGCAATAATGG
CTGAAGAAAGTGTGAAGTTGCTGGGTTACTGGGCAAGCCCCTTTGCTCTT
AGAGTTAAGTGGGCGCTCAAACTGAAGGGAGTTCACTACGAATATGTTGA
AGAGAATCTCCCCAACAAGAGTCCCTTGCTGTTGCGATACAATCCGGTTT
ATAAGAAGATTCCAGTTCTTGTACACAATGGGAAACCATTGGCAGAATCA
CTACTGATCATCGAATACATTGATGAAGCGTGGAAACAAAATCCTCTCCT
CCCAGAAGATCCTTACGAACGGGCCAATGCACGTTTCTGGGCAAAATTCT
TTGATGAGAAGTGTGTACCTGAAGTCATGGGAGCATTTGCCTCACAAGGG
GAGGAACAAGAGAAAGCTGCAAAAGCTCGAGAGAATCTGAAGATGCTGGA
AAGGGCTCTGGAGGGGAAGCCCTTTTTTGGTGGTGACAAGATAGGCTTTC
TGGACATTGCTGTG
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