CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            NTTNRQVTFCKRR+GLLKKAYELSVLCDAEVAL+VFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN  ++ E N Q YQQEA
Sbjct:   55 NTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEA 136          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.377e-27
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGS-ITEANT-QFYQQEA 489
            NTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+ NN+V+ATIDRYKKA A  S  G+ + E N  Q+YQQE+
Sbjct:   13 NTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQES 97          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.391e-26
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANT-QFYQQEA 489
            N T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE++N NS R+TI+RYKKA A +S    + + N+ Q++QQEA
Sbjct:   13 NKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEA 96          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.248e-20
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  + +TI+RY + C + S   +  E  TQ + QE T
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNR-CYNCSLSNNKPEETTQSWCQEVT 94          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FS +G+LYE+A+++++ TIDRY +   D  +   ++E N Q  + EA
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEA 94          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQ 483
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T++RY+  C ++ +  +       +Y +
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWYHE 92          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKAC--ADSSNPGSITEANTQFYQQ 483
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T+++Y   C  A  SN       +  +YQ+
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQE 94          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITE 459
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE+A+  S++ TIDRYK    D  N  +I +
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQ 85          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITE 459
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE+A+  S++ TIDRYK    D  N  +I +
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQ 85          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK---ACADSSNPGSITEANTQFY 477
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + S +  T++RY++      ++S P   TE++ Q Y
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEY 94          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
MAD58_ORYSJ9.213e-3279.27MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD13_ORYSJ1.377e-2777.65MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD21_ORYSJ3.391e-2669.05MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL6_ARATH1.248e-2061.45Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
SOC1_ARATH2.780e-2057.32MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MADS6_ORYSJ1.057e-1955.00MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ1.802e-1957.32MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MAD56_ORYSJ6.848e-1968.49MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI6.848e-1968.49MADS-box transcription factor 56 OS=Oryza sativa s... [more]
CMB1_DIACA6.848e-1959.76MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
back to top