CX293840
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32 Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489 NTTNRQVTFCKRR+GLLKKAYELSVLCDAEVAL+VFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN ++ E N Q YQQEA Sbjct: 55 NTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEA 136
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 1.377e-27 Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGS-ITEANT-QFYQQEA 489 NTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+ NN+V+ATIDRYKKA A S G+ + E N Q+YQQE+ Sbjct: 13 NTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQES 97
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.391e-26 Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANT-QFYQQEA 489 N T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE++N NS R+TI+RYKKA A +S + + N+ Q++QQEA Sbjct: 13 NKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEA 96
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.248e-20 Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + +TI+RY + C + S + E TQ + QE T Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNR-CYNCSLSNNKPEETTQSWCQEVT 94
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489 N T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FS +G+LYE+A+++++ TIDRY + D + ++E N Q + EA Sbjct: 13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEA 94
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.057e-19 Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQ 483 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + T++RY+ C ++ + + +Y + Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWYHE 92
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19 Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKAC--ADSSNPGSITEANTQFYQQ 483 N NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ + + T+++Y C A SN + +YQ+ Sbjct: 13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQE 94
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19 Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITE 459 N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE+A+ S++ TIDRYK D N +I + Sbjct: 13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQ 85
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19 Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITE 459 N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RGRLYE+A+ S++ TIDRYK D N +I + Sbjct: 13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQ 85
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19 Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1 Query: 244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK---ACADSSNPGSITEANTQFY 477 N NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + S + T++RY++ ++S P TE++ Q Y Sbjct: 13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEY 94 The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bpback to top |