CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.168e-18
Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSN 441
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVAL++FS R +LYE++++S+ ATI+RY++   +  N
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGN 78          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYK 417
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RG+LYE+A+ S + TI+RY+
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYR 70          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEY++ S+++ IDRY K+  D     +   +  +F+Q+EA
Sbjct:   13 NSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKS-KDEQQAVANPNSELKFWQREA 93          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.439e-18
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSIT 456
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + +S+  T++RY+K C   +  G++T
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQK-CNYGAPEGNVT 83          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++S +  T+DRY+K
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQK 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNP 444
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K    +  P
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEP 80          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L+VFSS GRLYE+++ +++  IDRY  A  +     + +E   + +Q+EA
Sbjct:   13 NSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLGGNATSE--IKIWQREA 92          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQE 486
            NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K    +  P   T    +   Q+
Sbjct:   16 NRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQ 94          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACAD 432
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+ +++S+  T++RY+K   D
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQD 76          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK 420
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK 72          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
AGL19_ARATH1.168e-1863.64Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD50_ORYSJ2.602e-1875.86MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD27_ORYSJ3.399e-1853.66MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MTF1_PEA4.439e-1865.28MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP1_ARATH7.572e-1873.33Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP3_ARATH1.292e-1764.71Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD57_ORYSJ1.292e-1754.88MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL9_SOLLC1.292e-1756.96Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
AGL14_ARATH1.292e-1767.19Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AGL9_PETHY1.687e-1771.67Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]

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Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
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