CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK 420
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T++RY+K
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQK 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK 420
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQK 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQE 486
            N  NRQVTF KRR  LLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++ S+  T+++Y+K C   S   +I    TQ  QQE
Sbjct:   13 NKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQK-CNFGSPESTIISRETQSSQQE 93          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.877e-17
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQ 480
            N  NRQVTF KRRNGLLKKAYELSVLCDAE+AL++FS+RG+LYE+ +  + +  T+D+Y+K    + +P    +     YQ
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQ 93          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.877e-17
Identity = 44/85 (51.76%), Postives = 64/85 (75.29%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEA 489
            ++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FSS G+LY++A++S+++ IDRY K+  +     NP S      +F+Q+EA
Sbjct:   13 DSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPAS----EVKFWQREA 93          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ + S +  T++RY+K
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQK 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK 420
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T+++Y+K
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK 420
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T+++Y+K
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTF KRR GLLKKA+ELSVLCDAE+ LI+FSS G+L+EY  A++S++  I+RY+K      +   ITE + Q    E T
Sbjct:   13 NTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKV-----SGARITEYDNQHLYCEMT 92          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            N   RQVTF KR++GLLKKAYELSVLCDAEV+LI+FS+ G+LYE++N  V  TI+RY + C D+       E +TQ  +QE T
Sbjct:   13 NKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYR-CKDNLLDNDTLE-DTQGLRQEVT 93          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
MADS8_ORYSJ2.203e-1771.67MADS-box transcription factor 8 OS=Oryza sativa su... [more]
AGL9_SINAL2.203e-1771.67Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_ARADE2.203e-1758.54Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL3_ARATH2.877e-1753.09Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
AGL21_ARATH2.877e-1751.76Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
SEP2_ARATH4.908e-1771.67Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MADS7_ORYSJ4.908e-1770.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI4.908e-1770.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
GGM13_GNEGN6.410e-1756.47MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AGL13_ARATH8.371e-1756.63Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
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