CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEAT 492
            NT NRQVTF KRR GL+KKA EL++LCDA+V LIVFS  GRLY+++++S+++ I+RY++A  +     NP S      +F+Q+E T
Sbjct:   13 NTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMS----EAKFWQREVT 94          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYK 417
            N  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RGRL+E++ +S +  T++RY+
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYR 71          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYK 417
            N  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RGRL+E++ +S +  T++RY+
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYR 71          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGS-ITEANTQFY 477
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S +  T++RY+    +S +  +   E N Q Y
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEY 92          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGS-ITEANTQFY 477
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVALI+FS RGRL+E++++S +  T++RY+    +S +  +   E N Q Y
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEY 92          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY++A++S+++ I+RY +   D     +   +  + +QQEA
Sbjct:   13 NATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMN-ASSEAKLWQQEA 93          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQ 471
            N  NRQVTF KRRNGLLKKA+E+SVLCDA+VALIVFS++G+LYE+ +++S+   ++RY++   D     ++ E NT+
Sbjct:   13 NKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDER---AVLEPNTE 86          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQ 471
            N  NRQVTF KRRNGLLKKA+E+SVLCDA+VALIVFS++G+LYE+ +++S+   ++RY++   D     ++ E NT+
Sbjct:   13 NKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDER---AVLEPNTE 86          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQE 486
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVAL++FS  GRLY+++++S +  T++RY++    S +  + T    Q   QE
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQE 94          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK--------ACADSSNPGSIT 456
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYAN+S +   ++RY++           D ++PGS T
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWT 92          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
MAD25_ORYSJ2.436e-1651.16MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MADS5_ORYSJ3.181e-1669.49MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI3.181e-1669.49MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS1_ORYSJ3.181e-1656.25MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI3.181e-1656.25MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD23_ORYSJ4.155e-1651.22MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD18_ORYSJ5.426e-1654.55MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI5.426e-1654.55MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD34_ORYSJ7.087e-1652.44MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL8_SOLTU7.087e-1655.00Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
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