CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEA 489
            ++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FS+  +LY++A++SV++TI+R+  A  +     NP S      +F+Q+EA
Sbjct:   13 DSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPAS----EVKFWQREA 93          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK--------ACADSSNPGSITEANTQ 471
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYA +S +   ++RY++           D ++PGS T  N +
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAK 97          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EYAN+S +   ++RY++
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYER 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRRNGLLKKA+E+SVLCDAEVA IVFS +G+LYEYA +S +   ++RY++
Sbjct:   13 NKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYER 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            NT NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LY+YA +S +   ++RY++
Sbjct:   13 NTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYER 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPG 447
            N  +RQVTF KRR GLLKKA+ELSVLCDAEVA+IVFS  G+L+E+++ S++ T+ RY      S  PG
Sbjct:   13 NANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPG 80          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.999e-15
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFSS+G+L+EY+ +S +   ++RY +
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDR 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.835e-15
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRR+GLLKKA E+SVLCDAEVALI+FS++G+LYEYA +S +   ++RY++
Sbjct:   13 NKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYER 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.023e-14
Identity = 37/60 (61.67%), Postives = 51/60 (85.00%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FSS+G+L+EY+ +S +   ++RY +
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDR 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.023e-14
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            N  +RQVTF KRR+GLLKKA ELSVLCDAEVA+IVFS  G+L+EY++  ++ T+ RY
Sbjct:   13 NANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRY 69          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
AGL17_ARATH9.256e-1649.41Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
AGL8_SOLCO1.579e-1551.76Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLLC2.062e-1565.00Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD15_ORYSJ3.517e-1566.67MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD14_ORYSI4.594e-1565.00MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL15_BRANA4.594e-1558.82Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL8_ARATH5.999e-1565.00Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
MAD14_ORYSJ7.835e-1565.00MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL8_SINAL1.023e-1461.67Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL15_ARATH1.023e-1464.91Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
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