CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 37/60 (61.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S +   ++RY++
Sbjct:   13 NKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYER 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 37/60 (61.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S +   ++RY++
Sbjct:   13 NKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYER 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSS-NPGSI 453
            N  +RQVTFCKRR GLLKKA ELSVLCDA+V +I+FSS+G+L+E A N ++   ++RY+   A     PG++
Sbjct:   13 NPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGAL 84          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKA 423
            N T+RQVTF KRR+GL+KK +ELSVLCDA++ LIVFS++G+L EY     S++  IDRY KA
Sbjct:   13 NNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKA 74          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK 420
            N  NRQVTF KRR GLLKKA E+SVLCDAEV+LIVFS +G+L+EY++ S +   ++RY++
Sbjct:   13 NKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYER 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.663e-14
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            N T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L+E+ ++S++  ++R+
Sbjct:   13 NATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERH 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.663e-14
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSN 441
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQAN 79          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 8.663e-14
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSN 441
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQAN 79          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.663e-14
Identity = 35/56 (62.50%), Postives = 48/56 (85.71%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDR 411
            N+T RQVTF KRR GL KKA ELSVLCDA+VALI+FSS G+L++Y+++S++  ++R
Sbjct:   13 NSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILER 68          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSIT 456
            N  +RQVTFCKRR GLLKKA ELSVLCDAE+ +++FS +G+L+E A   ++   ID+Y K         S T
Sbjct:   13 NPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSAT 84          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
AP1_SINAL3.889e-1461.67Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH3.889e-1461.67Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD33_ORYSJ6.633e-1454.17MADS-box transcription factor 33 OS=Oryza sativa s... [more]
DEF21_ANTMA6.633e-1461.29MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
CAL_ARATH6.633e-1461.67Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
SVP_ARATH8.663e-1461.40MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD26_ORYSJ8.663e-1452.24MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI8.663e-1452.24MADS-box transcription factor 26 OS=Oryza sativa s... [more]
JOIN_SOLLC8.663e-1462.50MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
AGL12_ARATH1.131e-1351.39Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
back to top