CX293848

Overview
NameCX293848
Unique NameCX293848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CPXB_BACME (Bifunctional P-450/NADPH-P450 reductase OS=Bacillus megaterium GN=CYP102A1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 9.851e-20
Identity = 56/151 (37.09%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATG 450
            TTS LL++ +  L K+    ++A +E  +V  +  P Y ++  LK V M+L E LRL+P   A S    ++T L G   L  G ++ + +  +H+D  +WGDD  EF+PERF    + +A  Q ++ PF +G R C+GQ FAL EA +  G
Sbjct:  269 TTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFE---NPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLG 416          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A3_CAEEL (Putative cytochrome P450 CYP13A3 OS=Caenorhabditis elegans GN=cyp-13A3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.851e-20
Identity = 49/148 (33.11%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTAL-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT++ L+++  LL++H + Q++ ++EV +   + +  + +L+ LK ++ ++ E LRLYP  + + +R  +K T +  + +  G  +      +H DP+ WG++A EFKPER+  G  +A   + +Y PF  GPRIC+G   A +E KM
Sbjct:  330 TTALSLSYSSYLLARHPEIQKKLQEEVDRECPDPEVTFDQLSKLKYMECVIKETLRLYPLASIVHNRKCMKSTTVLGMKIEEGTNVQADTWTLHYDPKFWGENANEFKPERWESGDEQAVA-KGAYLPFGLGPRICIGMRLAYMEEKM 476          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4F2_HUMAN (Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapiens GN=CYP4F2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 52/155 (33.55%), Postives = 88/155 (56.77%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGD----DAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT+  L+W +  L+KH ++QER RQEV ++  + +P   ++ +L HL  + M + E LRL+PP+  +SR V ++  L     +P G+   + +   H +P +W D    D   F PE   E      ++ +++ PF++GPR C+GQ FA+ E K+
Sbjct:  332 TTASGLSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAHLPFLTMCMKESLRLHPPVPVISRHVTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEVYDPFRFDPENIKE------RSPLAFIPFSAGPRNCIGQTFAMAEMKV 480          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4D1_DROSI (Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4d1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 53/154 (34.42%), Postives = 84/154 (54.55%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATGN 453
            TTS  L +    ++ H + Q++  +E+  V GN+K     Y  LN L  V + + E LR+YP +  L R VL++ ++    +PAG  IG+  + + +  EL+ +    FKPERF    +    N  +Y PF++GPR C+GQ FA++E K    N
Sbjct:  320 TTSSALMFFFYNIATHPEAQKKCFEEIRSVVGNDKSTPVSYELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPN-SFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVAN 472          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4D1_DROME (Cytochrome P450 4d1 OS=Drosophila melanogaster GN=Cyp4d1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 53/154 (34.42%), Postives = 84/154 (54.55%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATGN 453
            TTS  L +    ++ H + Q++  +E+  V GN+K     Y  LN L  V + + E LR+YP +  L R VL++ ++    +PAG  IG+  + + +  EL+ +    FKPERF    +    N  +Y PF++GPR C+GQ FA++E K    N
Sbjct:  320 TTSSALMFFFYNIATHPEAQKKCFEEIRSVVGNDKSTPVSYELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPN-SFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVAN 472          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFASGPRICVGQNFALVEAKMA 444
            TTS +L++ M  L+ H D Q++ ++E+  V  N  P  Y  +  ++ + M++ E LRL+P    L R   K+ ++  + +P GV + +P   +H+DP+ W  +  +F PERF    SK  K+ +    Y PF SGPR C+G  FAL+  K+A
Sbjct:  309 TTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYW-TEPEKFLPERF----SKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 51/149 (34.23%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++T+  L+ H D Q++ ++E+ +   N  P  Y  +  ++ + M+L E LRLYP    L R   K+ +L  + +P G  + +P   +H DP+ W  +  EF+PERF++  +K + +   Y PF  GPR C+G  FA +  K+A
Sbjct:  310 TTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHW-PEPEEFQPERFSKE-NKGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLA 456          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A4_CAEEL (Putative cytochrome P450 CYP13A4 OS=Caenorhabditis elegans GN=cyp-13A4 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 47/148 (31.76%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTAL-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT++ L+++  LL+ H + Q++ ++EV +   + +  + +++ LK ++ ++ E LR+YP  + + +R  +K+T +  + +  G  + +    +H DP++WGDDA EFKPER+  G  +    +  Y PF  GPRIC+G   A++E K+
Sbjct:  330 TTALSLSYSSYLLATHPEIQKKLQEEVDRECPDPEVTFDQISKLKYMECVVKEALRMYPLASLVHNRKCMKKTNVLGVEIDEGTNVQVDTWTLHYDPKVWGDDASEFKPERWETG-DELFYAKGGYLPFGMGPRICIGMRLAMMEEKL 476          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4F3_MOUSE (Leukotriene-B(4) omega-hydroxylase 2 OS=Mus musculus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 52/152 (34.21%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD---YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TT+  L+W +  L++H ++QER RQEV ++  + +P+   + +L  L  + M + E LRL+PP+TA+SR   ++  L +   +P GV   + +   H +P +W D  V + P RF +  +   ++ +++ PF++GPR C+GQ FA+ E K+A
Sbjct:  332 TTASGLSWILYNLARHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTAISRCCTQDIVLPDGRVIPKGVISRISIFGTHHNPAVWPDPEV-YDPFRF-DADNVKGRSPLAFIPFSAGPRNCIGQTFAMSEMKVA 481          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C4D20_DROME (Probable cytochrome P450 4d20 OS=Drosophila melanogaster GN=Cyp4d20 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 50/150 (33.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TTS  ++  +  +++H + Q+R  +E+ +V G +        +L  LK +  ++ E +RLYPP+ A+ R   KE ++G+ T+PA   I L +   H+D   +  D + F+PERF E   +   N  +Y PF++GP+ C+GQ FA++E K+
Sbjct:  320 TTSSGVSHALYAIARHPEVQQRIFEELQRVLGPDASAPVTQAQLQDLKYLDCVIKETMRLYPPVPAIGRHAQKELEIGDKTIPANTSIYLVLYYAHRDANYF-PDPLSFRPERFLED-QEQGHNTFAYVPFSAGPKNCIGQKFAVLEMKV 467          
The following BLAST results are available for this feature:
BLAST of CX293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
CPXB_BACME9.851e-2037.09Bifunctional P-450/NADPH-P450 reductase OS=Bacillu... [more]
C13A3_CAEEL9.851e-2033.11Putative cytochrome P450 CYP13A3 OS=Caenorhabditis... [more]
CP4F2_HUMAN1.287e-1933.55Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapie... [more]
CP4D1_DROSI1.680e-1934.42Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4... [more]
CP4D1_DROME1.680e-1934.42Cytochrome P450 4d1 OS=Drosophila melanogaster GN=... [more]
CP3A4_HUMAN1.680e-1934.87Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
CP341_MOUSE1.680e-1934.23Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
C13A4_CAEEL1.680e-1931.76Putative cytochrome P450 CYP13A4 OS=Caenorhabditis... [more]
CP4F3_MOUSE2.195e-1934.21Leukotriene-B(4) omega-hydroxylase 2 OS=Mus muscul... [more]
C4D20_DROME2.195e-1933.33Probable cytochrome P450 4d20 OS=Drosophila melano... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001E11SK FlavSen1 Citrus clementina cDNA clone C05001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293848 ID=CX293848; Name=CX293848; organism=Citrus clementina; type=EST; length=477bp
ACTACCTCTGTTTTGCTTAATTGGACAATGGTCTTATTGAGCAAGCATCA
AGATTGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATA
ATAAGCCCGACTATGGTGAATTGAACCACCTCAAAATTGTCCAGATGATA
CTTTACGAGGTACTCAGGCTTTATCCGCCCTTAACTGCGCTTAGTCGAGC
TGTTCTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTC
AAATTGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGT
GACGATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAA
GGCGGCAAAAAATCAAGTTTCATATTTCCCATTCGCATCGGGTCCTAGGA
TATGTGTTGGACAAAATTTTGCTCTAGTAGAAGCAAAAATGGCCACCGGC
AATGATTCTTCAAAACTACTCATTCGA
back to top