CX293848

Overview
NameCX293848
Unique NameCX293848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AV_MESAU (Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CYP3A31 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.866e-19
Identity = 48/149 (32.21%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNN-KPDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ + LL+ H D Q++ ++E+     N  +P Y ++  ++ + M+L E LRLYP  + L R   ++ ++  + +P G  + +P+  +H DP+ W  +  +F+PERF++  +K + +   + PF +GPR C+G  FAL+  K+A
Sbjct:  307 TTSSTLSFALYLLATHPDVQKKLQEEIDIALPNKARPSYDKVMEMEYLDMVLNETLRLYPIGSRLERVCKQDVEMDGVFVPKGSIVMVPVFALHYDPQYW-PEPEKFRPERFSKE-NKGSIDPYIFLPFGNGPRNCIGMRFALMNMKLA 453          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4FE_MOUSE (Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus GN=Cyp4f14 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 53/153 (34.64%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD---YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERF-AEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TT+  L+W +  L++H ++QER RQEV ++    +P+   + +L  L  + M + E LRL+PP+T +SR   ++  L +  T+P G+   + +  +H +P +W D  V + P RF  E I  ++   +++ PF++GPR C+GQ FA+ E K+A
Sbjct:  332 TTASGLSWILYNLARHPEYQERCRQEVQELLRGREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILLPDGRTIPKGIICLISIFGIHHNPSVWPDPEV-YDPFRFDPENIKDSSP--LAFIPFSAGPRNCIGQTFAMSEMKVA 481          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 49/149 (32.89%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L + M  L+ H D Q++ ++E+  V  N  P  Y  L  ++ + M++ E LRL+P ++ ++R   K+ ++  + +P G+ + +P+  +H DP+ W  +  +F PERF++  +K + +   Y PF +GPR C+G  FAL   K+A
Sbjct:  309 TTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPVVSRVTRVCKKDIEINGVFIPKGLAVMVPIYALHHDPKYW-TEPEKFCPERFSKK-NKDSIDLYRYIPFGAGPRNCIGMRFALTNIKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3A1_RAT (Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.889e-19
Identity = 49/148 (33.11%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    4 TSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TS  L++ +  L+ H D Q++ ++E+ +   N  P  Y  +  ++ + M+L E LRLYP    L R   K+ ++  + +P G  + +P   +H+DP+ W  +  EF+PERF++  +K + +   Y PF +GPR C+G  FAL+  K+A
Sbjct:  311 TSSTLSFVLHSLATHPDTQKKLQEEIDRALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERVCKKDVEINGVFMPKGSVVMIPSYALHRDPQHW-PEPEEFRPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLA 456          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4P3_DROME (Probable cytochrome P450 4p3 OS=Drosophila melanogaster GN=Cyp4p3 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 55/149 (36.91%), Postives = 90/149 (60.40%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGN--NKPDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAK 438
            TTS+ L + ++ +S + + QE+  QE+     +  N  + G+LN LK ++  + E +RL+P + A+ R   +ET+L N L LP G QI + +  +H++PE W D   EF+PERF    S+  ++  +Y PF++G R C+GQ FA+ E K
Sbjct:  326 TTSIGLMFGLMNMSLYPEEQEKCYQEIQANIDDELNILNIGQLNKLKNLEYFIKETMRLFPSVPAMGRETTRETELSNGLILPKGSQIFVHVFDIHRNPEYW-DSPEEFRPERFLPENSQ-NRHTYAYIPFSAGQRNCIGQKFAMQEMK 472          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNK-PDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ M LL+ H D Q++ ++E+  +  N +   Y  L  ++ + M++ E LRLYP    L R   K+  +    +P G  + +P   +H+DP+ W  +  EF+PERF++  +K   N   Y PF +GPR C+G  FAL+  K+A
Sbjct:  307 TTSSTLSFIMHLLATHPDVQQKLQEEIDTLLPNKELATYDTLVKMEYLDMVVNETLRLYPIAGRLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHW-TEPDEFRPERFSKK-NKDNINPYIYHPFGAGPRNCLGMRFALMNIKLA 453          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP134_DROME (Probable cytochrome P450 313a4 OS=Drosophila melanogaster GN=Cyp313a4 PE=2 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 49/151 (32.45%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT+  + +T++LL+   ++QERA +E+  +F N       Y +   +  + +IL E +R+ PP+  +SR   ++ KL N + +P GVQI + +  +H+  ++WG DA  F P+ F    +   K+  +Y PF  G R C+G  +AL+ AK+
Sbjct:  303 TTANAVYYTLMLLAMFPEYQERAFEEIKTIFPNTGDFDVSYADTQQMVYLDLILNESMRVIPPVPVVSRQTSQDLKLSNGIVVPKGVQIAIDIYHMHRSKKIWGPDAETFNPDHFLPH-NIQDKHPYAYIPFTKGIRNCIGWRYALISAKV 452          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4F3_HUMAN (Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapiens GN=CYP4F3 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18
Identity = 52/154 (33.77%), Postives = 90/154 (58.44%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATG 450
            TT+  L+W +  L+KH ++QER RQEV ++  + +P   ++ +L  L  + M + E LRL+PP+ A+SR   ++  L +   +P G+   + +   H +P +W D  V + P RF     K  ++ +++ PF++GPR C+GQ FA+ E K+  G
Sbjct:  332 TTASGLSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAQLPFLTMCIKESLRLHPPVPAVSRCCTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEV-YDPFRFDPKNIKE-RSPLAFIPFSAGPRNCIGQAFAMAEMKVVLG 483          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18
Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ M  L+ H D Q++ ++E+  V  N  P  Y  +  ++ + M++ E LRL+P    L R   K+ ++  + +P GV + +P   +H DP+ W  +  +F PERF++  +K   +   Y PF +GPR C+G  FAL+  K+A
Sbjct:  309 TTSSTLSFIMYELATHPDVQQKLQEEIDAVLPNKAPATYDTVLQMEYLDMVVNETLRLFPLAMRLERVCKKDVEINGVFIPKGVVVMIPSYALHYDPKYW-TEPEKFLPERFSKN-NKDNIDPYIYTPFGTGPRNCIGMRFALMNMKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4FC_HUMAN (Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18
Identity = 52/151 (34.44%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT+  L+W +  L++H ++QER RQEV ++  +  P   ++ +L  L  + M + E LRL+PP   +SR   ++  L +   +P G+   + +I VH +P +W D  V + P RF    SK  ++ +++ PF++GPR C+GQ FA+ E K+
Sbjct:  332 TTASGLSWVLYNLARHPEYQERCRQEVQELLKDRDPKEIEWDDLAQLPFLTMCVKESLRLHPPAPFISRCCTQDIVLPDGRVIPKGITCLIDIIGVHHNPTVWPDPEV-YDPFRFDPENSKG-RSPLAFIPFSAGPRNCIGQAFAMAEMKV 480          
The following BLAST results are available for this feature:
BLAST of CX293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
CP3AV_MESAU2.866e-1932.21Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CY... [more]
CP4FE_MOUSE3.743e-1934.64Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus... [more]
CP343_HUMAN3.743e-1932.89Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]
CP3A1_RAT4.889e-1933.11Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1... [more]
CP4P3_DROME6.385e-1936.91Probable cytochrome P450 4p3 OS=Drosophila melanog... [more]
CP3A6_RABIT8.339e-1934.90Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP134_DROME1.089e-1832.45Probable cytochrome P450 313a4 OS=Drosophila melan... [more]
CP4F3_HUMAN1.422e-1833.77Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapie... [more]
CP3AL_CALJA1.422e-1833.56Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]
CP4FC_HUMAN1.858e-1834.44Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE... [more]

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Properties
Property NameValue
Genbank descriptionC05001E11SK FlavSen1 Citrus clementina cDNA clone C05001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293848 ID=CX293848; Name=CX293848; organism=Citrus clementina; type=EST; length=477bp
ACTACCTCTGTTTTGCTTAATTGGACAATGGTCTTATTGAGCAAGCATCA
AGATTGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATA
ATAAGCCCGACTATGGTGAATTGAACCACCTCAAAATTGTCCAGATGATA
CTTTACGAGGTACTCAGGCTTTATCCGCCCTTAACTGCGCTTAGTCGAGC
TGTTCTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTC
AAATTGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGT
GACGATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAA
GGCGGCAAAAAATCAAGTTTCATATTTCCCATTCGCATCGGGTCCTAGGA
TATGTGTTGGACAAAATTTTGCTCTAGTAGAAGCAAAAATGGCCACCGGC
AATGATTCTTCAAAACTACTCATTCGA
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