CX293904

Overview
NameCX293904
Unique NameCX293904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_EMENI (Ornithine aminotransferase OS=Emericella nidulans GN=otaA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.322e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP-------LLPGHLKD-DFGDITALEKIFRESGDQIAGFLFEPIQGEAGVI 397
            +AII+S    FHGRT+AAIS+S D E+   +GP        +PG  K   + D  AL + F ++G  +A FL EPIQGEAG+I
Sbjct:  145 EAIILSAENNFHGRTMAAISLSSDPESRENYGPYVPNIGCTIPGTEKPITYNDKAALREAFEKAGSNLAAFLVEPIQGEAGII 227          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_MACCJ (Ornithine aminotransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=rocD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.400e-11
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            QA I++  G FHGRTLAA+S+S + E  RG+GPLL G    +FGDI   E+I        A  L EPIQGEAG+
Sbjct:  131 QAEIIAMKGNFHGRTLAAVSLSSEAEYQRGYGPLLGGFKLVEFGDI---EQIKSAITPNTAAVLLEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_STAES (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rocD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            +A I++  G FHGRT+A +S+S + E  RG+GPLL G  K +FGD+  L+    ++    A  L EPIQGEAG+
Sbjct:  131 KAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLEGFRKVEFGDVNQLKAAINKN---TAAILVEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_STAEQ (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rocD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            +A I++  G FHGRT+A +S+S + E  RG+GPLL G  K +FGD+  L+    ++    A  L EPIQGEAG+
Sbjct:  131 KAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVEFGDVNQLKAAINKN---TAAILVEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_BREBN (Ornithine aminotransferase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rocD PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGVI 397
            QA I+ C G FHGRT+   S S   E  RGFGP  PG     +GDI AL++    +    A F+ EPIQGEAG+I
Sbjct:  131 QAEIIVCEGNFHGRTVTVTSFSSAEEYRRGFGPFTPGFKIIPYGDIEALKQAITPN---TAAFMLEPIQGEAGII 202          
The following BLAST results are available for this feature:
BLAST of CX293904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
OAT_EMENI3.322e-1145.78Ornithine aminotransferase OS=Emericella nidulans ... [more]
OAT_MACCJ7.400e-1151.35Ornithine aminotransferase OS=Macrococcus caseolyt... [more]
OAT_STAES9.665e-1145.95Ornithine aminotransferase OS=Staphylococcus epide... [more]
OAT_STAEQ9.665e-1145.95Ornithine aminotransferase OS=Staphylococcus epide... [more]
OAT_BREBN9.665e-1148.00Ornithine aminotransferase OS=Brevibacillus brevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05002D01SK FlavRip1 Citrus clementina cDNA clone C05002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293904 ID=CX293904; Name=CX293904; organism=Citrus clementina; type=EST; length=398bp
TGCTTGTATAGATTTGATATAGAACTCCACTGGCTATTTAAATATTAATC
TTCACACTGTACTTCTCTGTTCTGGTAAGCCTTTAAACTAGACCCCTCTG
CTCTGATACCTATCATGTTATTTATCCCTTTTAGTGTATTGCGTCAGTCC
TTTTCTTAAACTAAACCTTATGCAGGCTATCATTGTTTCTTGTTGTGGCT
GCTTCCATGGACGCACATTGGCTGCCATTTCTATGAGCTGTGACAATGAG
GCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGATGATTT
TGGTGATATAACTGCTCTAGAGAAAATCTTTAGAGAAAGTGGAGATCAAA
TAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATAA
back to top