CX293920

Overview
NameCX293920
Unique NameCX293920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MYCGI (50S ribosomal protein L1 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 3
Query:   15 AGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSI 413
            AGAD+VG DDLIE+I+GGF++FD  IA+PD M KV  + +ILGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  I   KP  +KG Y K   + ++ GP I
Sbjct:   90 AGADVVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVTKAVNDIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEILRAKPSSSKGRYLKKVVVSTTTGPGI 222          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MYCA1 (50S ribosomal protein L1 OS=Mycobacterium avium (strain 104) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 66/137 (48.18%), Postives = 92/137 (67.15%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSI 413
            +A+ AGAD+VG DDLIE+I+GGF++FD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   86 QAQAAGADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEVLRLKPSASKGRYLKKITVSTTTGPGI 222          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GRAFK (50S ribosomal protein L1 OS=Gramella forsetii (strain KT0803) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 66/146 (45.21%), Postives = 99/146 (67.81%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EAK AGAD VG D+ +++IKGG+ + D +I  P +M K+  LG++LGPRGLMPNPK GTVT +I +A+ + K GK++++ DK GIVH   GKA F  + +  N    + ++   KP+ AKGVY K+ Y+ S+M PS++++ K   +
Sbjct:   86 EAKEAGADYVGLDEYLDKIKGGWTDVDVIITMPSVMGKLGPLGRVLGPRGLMPNPKTGTVTMDIAKAVSDVKAGKIDFKVDKHGIVHAGVGKASFDAEKIAGNARELLTTLVKLKPQAAKGVYIKTIYMSSTMSPSVQIDTKRFTE 231          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 67/140 (47.86%), Postives = 95/140 (67.86%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            +A  AGAD  G ++ I QI+ G+++FD +IA+PDMM K+  LGKILG +GLMPNPK+GTVT +I  A+ EFKKGK+ +R DK G +H P GK DF  D +  NF A +  I   KP  +KG Y ++  +  +MGP ++++
Sbjct:   87 KALAAGADYAGAEEYINQIQQGWLDFDLVIATPDMMPKIGRLGKILGTKGLMPNPKSGTVTPDIAAAVSEFKKGKLAFRVDKLGSIHAPIGKVDFDLDKIEENFKAFMDQIIRLKPASSKGQYLRTVAVSLTMGPGVKMD 226          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CHLTR (50S ribosomal protein L1 OS=Chlamydia trachomatis GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437
            EA  AGAD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++   K  F    +  N  A   ++   KP  AKG Y  +  I S+MGP + ++ +E++
Sbjct:   86 EAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CHLTA (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437
            EA  AGAD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++   K  F    +  N  A   ++   KP  AKG Y  +  I S+MGP + ++ +E++
Sbjct:   86 EAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CAMHC (50S ribosomal protein L1 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 69/148 (46.62%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 446
            EAKNAGAD+VG ++LIE+I+ G + FD LIA+P++M  V  +G+ILGP+G+MPNPK  TVT +I  A++  K G+V +R DK G ++   GK  FS++ +  N    IK I  +KP  +KG Y KS  +  +M PS+ L+ +E+LD K
Sbjct:   86 EAKNAGADIVGSEELIEEIQKGNINFDVLIATPNLMGLVGKVGRILGPKGIMPNPKTDTVTMDITNAVKNAKSGQVNFRVDKQGNINAGIGKVSFSKEQICNNLTTFIKEINKHKPATSKGRYIKSGALSLTMSPSLSLDTQELLDLK 233          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_BEII9 (50S ribosomal protein L1 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 67/140 (47.86%), Postives = 95/140 (67.86%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA  AGAD+VG +DL+  ++GG + FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A++  K G VE+R +K GI+    GKA F  + LL N  A + ++   KP+GAKG Y +   + S+MGP ++++
Sbjct:   86 EALAAGADIVGAEDLVATVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIIQGSVGKASFETEKLLENIAAFVDAVAKAKPQGAKGTYIQRVALSSTMGPGVKID 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ALCBS (50S ribosomal protein L1 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 69/140 (49.29%), Postives = 93/140 (66.43%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EAK AGAD+VG DDL EQ++GG + FD +IASPD M  V  LG ILGPRGLMPNPK GTVT ++ QA++  K G+V YR DK GI+H   G+  F  + +  N  A I  ++  KP  AKG ++K   + ++MGP + ++
Sbjct:   86 EAKEAGADVVGFDDLAEQVQGGEINFDVVIASPDAMRVVGKLGTILGPRGLMPNPKVGTVTPDVAQAVKNAKGGQVRYRTDKGGIIHCTVGQVGFDTNAIKENVEALIADLKKAKPSSAKGTFFKKVTLSTTMGPGLSID 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SINMW (50S ribosomal protein L1 OS=Sinorhizobium medicae (strain WSM419) GN=rplA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.361e-33
Identity = 69/140 (49.29%), Postives = 95/140 (67.86%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EAK AGAD+VG ++L+E ++GG ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GIVH   GKA F    L  N  A   ++   KP GAKG Y K   + S+MGP ++++
Sbjct:   86 EAKAAGADVVGAEELVEIVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPTGAKGNYVKRVAVSSTMGPGLKID 225          
The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_MYCGI2.574e-3350.3850S ribosomal protein L1 OS=Mycobacterium gilvum (... [more]
RL1_MYCA12.574e-3348.1850S ribosomal protein L1 OS=Mycobacterium avium (s... [more]
RL1_GRAFK2.574e-3345.2150S ribosomal protein L1 OS=Gramella forsetii (str... [more]
RL1_FUSNN2.574e-3347.8650S ribosomal protein L1 OS=Fusobacterium nucleatu... [more]
RL1_CHLTR2.574e-3345.5250S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_CHLTA2.574e-3345.5250S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_CAMHC2.574e-3346.6250S ribosomal protein L1 OS=Campylobacter hominis ... [more]
RL1_BEII92.574e-3347.8650S ribosomal protein L1 OS=Beijerinckia indica su... [more]
RL1_ALCBS2.574e-3349.2950S ribosomal protein L1 OS=Alcanivorax borkumensi... [more]
RL1_SINMW3.361e-3349.2950S ribosomal protein L1 OS=Sinorhizobium medicae ... [more]

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Properties
Property NameValue
Genbank descriptionC05002E08SK FlavRip1 Citrus clementina cDNA clone C05002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bp
ATGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATT
GAACAAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACC
AGATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGG
GACTCATGCCAAATCCTAAAGCTGGTACTGTTACAACTAACATACCTCAG
GCCATAGAAGAATTCAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAAC
TGGGATTGTCCACATACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACC
TCCTCATAAACTTCCTTGCTGCTATTAAATCAATTGAAGCAAACAAGCCA
AAAGGGGCCAAAGGAGTGTACTGGAAAAGTGCTTACATTTGCTCATCAAT
GGGACCTTCCATTCGATTAAACATAAAAGAAATGCTCGATTACAAGCTTC
CATCAAATTTCTAAACGACATAACTAAATTTTGTAAATGATATCTTTAAC
TGTTCAGTCAGCCTCTTTGATACCCATGC
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