CX293920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MYCGI (50S ribosomal protein L1 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 3 Query: 15 AGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSI 413 AGAD+VG DDLIE+I+GGF++FD IA+PD M KV + +ILGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ I KP +KG Y K + ++ GP I Sbjct: 90 AGADVVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVTKAVNDIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEILRAKPSSSKGRYLKKVVVSTTTGPGI 222
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MYCA1 (50S ribosomal protein L1 OS=Mycobacterium avium (strain 104) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 66/137 (48.18%), Postives = 92/137 (67.15%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSI 413 +A+ AGAD+VG DDLIE+I+GGF++FD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 86 QAQAAGADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEVLRLKPSASKGRYLKKITVSTTTGPGI 222
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GRAFK (50S ribosomal protein L1 OS=Gramella forsetii (strain KT0803) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 66/146 (45.21%), Postives = 99/146 (67.81%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EAK AGAD VG D+ +++IKGG+ + D +I P +M K+ LG++LGPRGLMPNPK GTVT +I +A+ + K GK++++ DK GIVH GKA F + + N + ++ KP+ AKGVY K+ Y+ S+M PS++++ K + Sbjct: 86 EAKEAGADYVGLDEYLDKIKGGWTDVDVIITMPSVMGKLGPLGRVLGPRGLMPNPKTGTVTMDIAKAVSDVKAGKIDFKVDKHGIVHAGVGKASFDAEKIAGNARELLTTLVKLKPQAAKGVYIKTIYMSSTMSPSVQIDTKRFTE 231
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 67/140 (47.86%), Postives = 95/140 (67.86%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 +A AGAD G ++ I QI+ G+++FD +IA+PDMM K+ LGKILG +GLMPNPK+GTVT +I A+ EFKKGK+ +R DK G +H P GK DF D + NF A + I KP +KG Y ++ + +MGP ++++ Sbjct: 87 KALAAGADYAGAEEYINQIQQGWLDFDLVIATPDMMPKIGRLGKILGTKGLMPNPKSGTVTPDIAAAVSEFKKGKLAFRVDKLGSIHAPIGKVDFDLDKIEENFKAFMDQIIRLKPASSKGQYLRTVAVSLTMGPGVKMD 226
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CHLTR (50S ribosomal protein L1 OS=Chlamydia trachomatis GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437 EA AGAD VG DDL+E+IKGG+++FD +A+PDMM +V LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++ K F + N A ++ KP AKG Y + I S+MGP + ++ +E++ Sbjct: 86 EAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CHLTA (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437 EA AGAD VG DDL+E+IKGG+++FD +A+PDMM +V LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++ K F + N A ++ KP AKG Y + I S+MGP + ++ +E++ Sbjct: 86 EAIEAGADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CAMHC (50S ribosomal protein L1 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 69/148 (46.62%), Postives = 100/148 (67.57%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 446 EAKNAGAD+VG ++LIE+I+ G + FD LIA+P++M V +G+ILGP+G+MPNPK TVT +I A++ K G+V +R DK G ++ GK FS++ + N IK I +KP +KG Y KS + +M PS+ L+ +E+LD K Sbjct: 86 EAKNAGADIVGSEELIEEIQKGNINFDVLIATPNLMGLVGKVGRILGPKGIMPNPKTDTVTMDITNAVKNAKSGQVNFRVDKQGNINAGIGKVSFSKEQICNNLTTFIKEINKHKPATSKGRYIKSGALSLTMSPSLSLDTQELLDLK 233
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_BEII9 (50S ribosomal protein L1 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 67/140 (47.86%), Postives = 95/140 (67.86%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA AGAD+VG +DL+ ++GG + FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ A++ K G VE+R +K GI+ GKA F + LL N A + ++ KP+GAKG Y + + S+MGP ++++ Sbjct: 86 EALAAGADIVGAEDLVATVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIIQGSVGKASFETEKLLENIAAFVDAVAKAKPQGAKGTYIQRVALSSTMGPGVKID 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ALCBS (50S ribosomal protein L1 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33 Identity = 69/140 (49.29%), Postives = 93/140 (66.43%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EAK AGAD+VG DDL EQ++GG + FD +IASPD M V LG ILGPRGLMPNPK GTVT ++ QA++ K G+V YR DK GI+H G+ F + + N A I ++ KP AKG ++K + ++MGP + ++ Sbjct: 86 EAKEAGADVVGFDDLAEQVQGGEINFDVVIASPDAMRVVGKLGTILGPRGLMPNPKVGTVTPDVAQAVKNAKGGQVRYRTDKGGIIHCTVGQVGFDTNAIKENVEALIADLKKAKPSSAKGTFFKKVTLSTTMGPGLSID 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SINMW (50S ribosomal protein L1 OS=Sinorhizobium medicae (strain WSM419) GN=rplA PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.361e-33 Identity = 69/140 (49.29%), Postives = 95/140 (67.86%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EAK AGAD+VG ++L+E ++GG ++FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GIVH GKA F L N A ++ KP GAKG Y K + S+MGP ++++ Sbjct: 86 EAKAAGADVVGAEELVEIVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPTGAKGNYVKRVAVSSTMGPGLKID 225 The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bpback to top |