CX293920

Overview
NameCX293920
Unique NameCX293920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MOOTA (50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.840e-39
Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA+ AGAD VG +DL+E+I+GG+++FD  IA+PDMM  V  LG+ILGPRGLMPNPKAGTVT +I +A++E K GK+E+R DKT I+H P GKA F    L  NF A + ++   KP  AKG Y KS  + ++MGP IR+N
Sbjct:   86 EAEEAGADFVGAEDLVEKIQGGWLDFDVAIATPDMMGLVGRLGRILGPRGLMPNPKAGTVTMDIARAVKEVKAGKIEFRVDKTAIIHAPIGKASFEASKLKENFQALMDALLRAKPATAKGQYLKSVSLATTMGPGIRVN 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_HALOH (50S ribosomal protein L1 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.403e-39
Identity = 75/146 (51.37%), Postives = 103/146 (70.55%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EA+ AGAD+VG DDL E+IKGG+++FD  IA+PDMM  V  LG+ILGP+GLMPNPK GTVT  + +A+++ K GK+EYR DK G +H+P GK  F  DDL+ NF   I  +   +P  AKG Y +S  + S+MGP I+++  + +D
Sbjct:   86 EAEEAGADVVGADDLAEKIKGGWLDFDVAIATPDMMSVVGKLGRILGPKGLMPNPKVGTVTFELEKAVKDAKAGKIEYRVDKNGNIHLPIGKVSFPVDDLMENFKTIIDVLLRERPASAKGRYMRSVTVSSTMGPGIKVDPNQAID 231          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_HELAH (50S ribosomal protein L1 OS=Helicobacter acinonychis (strain Sheeba) GN=rplA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.993e-39
Identity = 75/148 (50.68%), Postives = 104/148 (70.27%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 446
            EAKNAGAD+VGGDDL E+IK G ++FD +IA+PDMM  V  +G+ILGP+GLMPNPK GTVT +I +A+   K G+V ++ DK G +H P GK  F E+ +  N L  +K+I   KP  AKG Y ++A +  +M PS+ L+ +E++D K
Sbjct:   87 EAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFKVDKKGNIHAPIGKVSFPEEKIKENMLELVKTINRLKPNSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.133e-39
Identity = 76/145 (52.41%), Postives = 104/145 (71.72%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            +AK AGAD VG DDLIE+I   G+ +FD  IA+PD+M K+  LGK+LGPRGLMP+PKAGTVT ++ QA++EFK GKVE R D+TG +HIP GK  F +DDL  N ++A   +   KP+ +KG + + A I S+MGP I +++  +
Sbjct:   86 QAKQAGADFVGSDDLIEKINNEGWTDFDVAIATPDIMRKIGRLGKVLGPRGLMPSPKAGTVTDDVAQAVKEFKAGKVEVRNDRTGNIHIPIGKVSFDKDDLKENLISAFDQLTKMKPENSKGKFIRKAVIASTMGPGINIDLSSL 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38
Identity = 77/144 (53.47%), Postives = 104/144 (72.22%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EAK AGA++VG +DL+E I+GG ++FD+ IA+PDMM  V  LGKILGP+G+MPNPK GTVT N+  A++  K G+VEYR D+TGI+H   GKA FS +D+  NF A I ++   KP GAKG Y K   I S+MGP + ++I ++
Sbjct:   86 EAKAAGAEVVGAEDLMEAIQGGSIDFDRCIATPDMMGVVGRLGKILGPKGMMPNPKLGTVTMNVADAVKAAKGGQVEYRVDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGRYVKKVAISSTMGPGVSIDIADL 229          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CAUSK (50S ribosomal protein L1 OS=Caulobacter sp. (strain K31) GN=rplA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38
Identity = 76/141 (53.90%), Postives = 102/141 (72.34%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 425
            EA  AGA+ VG +DL E+I GGFM+FD++IA+PDMM  V  LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH   GK  F+++ LLIN  A + ++   KP GAKG+Y K   + S+MGP  +++I
Sbjct:   84 EATAAGAEHVGAEDLYEKIVGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVGQAVKDAKGGAVEFRVEKAGIVHAGIGKVSFTDEALLINVKAMVDALVKAKPAGAKGIYVKRIGLSSTMGPGFKIDI 224          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38
Identity = 75/141 (53.19%), Postives = 103/141 (73.05%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA+ AGAD VG DDL+ +I+G  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +A++E K GKVEYR DKT I+H+P GKA F E  L  NF   ++++   KP  AKG Y+KS  + S+MGP IR+N
Sbjct:   86 EAEKAGADYVGSDDLVAKIQGENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLERAVKEIKAGKVEYRLDKTNIIHVPIGKASFEEAQLAENFKTLLEAVAKAKPAAAKGQYFKSVSVTSTMGPGIRVN 226          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SPHWW (50S ribosomal protein L1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 75/144 (52.08%), Postives = 105/144 (72.92%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EAK AGA++VG +DL+E I+GG ++FD+ IA+PDMM  V  LGKILGP+GLMPNPK GTVT N+ +A++  K G+VE+R +K GI+H   GKA F  +DL  NF A + +I   KP GAKG Y K A + S+MGP +++++ ++
Sbjct:   86 EAKAAGAEVVGAEDLLETIQGGTVDFDRCIATPDMMGLVGRLGKILGPKGLMPNPKLGTVTMNVAEAVKAAKGGQVEFRVEKAGIIHSGIGKASFPAEDLRANFDAFVDAIVKAKPTGAKGKYLKKAAVSSTMGPGVKIDVADV 229          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_LYSSC (50S ribosomal protein L1 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 74/140 (52.86%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA+ AGAD VG  + I++I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +AIEE K GKVEYRADK GI+H P GK  FS   L+ NFLA    ++  KP  AKG Y KS  I ++MGP+++++
Sbjct:   86 EAEAAGADYVGDAEYIQKIQQGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAIEEIKAGKVEYRADKAGIIHAPIGKVSFSAAKLVENFLAVFDVVQKAKPAAAKGTYMKSVNITTTMGPAVKID 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GRABC (50S ribosomal protein L1 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EAK AGAD+VG +DL E ++ G +EFD+ IA+PDMM  V  LGKILGPRGLMPNPK GTVT ++  A+   K G++E+RA+K GI+H   GKA F  D L+ N  A + +I+  KP GAKG Y + A + SSMGP +RL++  +
Sbjct:   85 EAKAAGADVVGAEDLAELVQNGTIEFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQIEFRAEKAGIIHAGIGKASFDADKLVENIRALVDAIQKAKPTGAKGTYLQKAALSSSMGPGMRLDVSSL 228          
The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_MOOTA1.840e-3955.7150S ribosomal protein L1 OS=Moorella thermoacetica... [more]
RL1_HALOH2.403e-3951.3750S ribosomal protein L1 OS=Halothermothrix orenii... [more]
RL1_HELAH6.993e-3950.6850S ribosomal protein L1 OS=Helicobacter acinonych... [more]
RL1_PETMO9.133e-3952.4150S ribosomal protein L1 OS=Petrotoga mobilis (str... [more]
RL1_ZYMMO1.193e-3853.4750S ribosomal protein L1 OS=Zymomonas mobilis GN=r... [more]
RL1_CAUSK1.193e-3853.9050S ribosomal protein L1 OS=Caulobacter sp. (strai... [more]
RL1_ALKMQ1.193e-3853.1950S ribosomal protein L1 OS=Alkaliphilus metallire... [more]
RL1_SPHWW1.558e-3852.0850S ribosomal protein L1 OS=Sphingomonas wittichii... [more]
RL1_LYSSC1.558e-3852.8650S ribosomal protein L1 OS=Lysinibacillus sphaeri... [more]
RL1_GRABC1.558e-3852.7850S ribosomal protein L1 OS=Granulibacter bethesde... [more]

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Properties
Property NameValue
Genbank descriptionC05002E08SK FlavRip1 Citrus clementina cDNA clone C05002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bp
ATGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATT
GAACAAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACC
AGATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGG
GACTCATGCCAAATCCTAAAGCTGGTACTGTTACAACTAACATACCTCAG
GCCATAGAAGAATTCAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAAC
TGGGATTGTCCACATACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACC
TCCTCATAAACTTCCTTGCTGCTATTAAATCAATTGAAGCAAACAAGCCA
AAAGGGGCCAAAGGAGTGTACTGGAAAAGTGCTTACATTTGCTCATCAAT
GGGACCTTCCATTCGATTAAACATAAAAGAAATGCTCGATTACAAGCTTC
CATCAAATTTCTAAACGACATAACTAAATTTTGTAAATGATATCTTTAAC
TGTTCAGTCAGCCTCTTTGATACCCATGC
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