CX293920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MOOTA (50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.840e-39 Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA+ AGAD VG +DL+E+I+GG+++FD IA+PDMM V LG+ILGPRGLMPNPKAGTVT +I +A++E K GK+E+R DKT I+H P GKA F L NF A + ++ KP AKG Y KS + ++MGP IR+N Sbjct: 86 EAEEAGADFVGAEDLVEKIQGGWLDFDVAIATPDMMGLVGRLGRILGPRGLMPNPKAGTVTMDIARAVKEVKAGKIEFRVDKTAIIHAPIGKASFEASKLKENFQALMDALLRAKPATAKGQYLKSVSLATTMGPGIRVN 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_HALOH (50S ribosomal protein L1 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplA PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.403e-39 Identity = 75/146 (51.37%), Postives = 103/146 (70.55%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EA+ AGAD+VG DDL E+IKGG+++FD IA+PDMM V LG+ILGP+GLMPNPK GTVT + +A+++ K GK+EYR DK G +H+P GK F DDL+ NF I + +P AKG Y +S + S+MGP I+++ + +D Sbjct: 86 EAEEAGADVVGADDLAEKIKGGWLDFDVAIATPDMMSVVGKLGRILGPKGLMPNPKVGTVTFELEKAVKDAKAGKIEYRVDKNGNIHLPIGKVSFPVDDLMENFKTIIDVLLRERPASAKGRYMRSVTVSSTMGPGIKVDPNQAID 231
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_HELAH (50S ribosomal protein L1 OS=Helicobacter acinonychis (strain Sheeba) GN=rplA PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 6.993e-39 Identity = 75/148 (50.68%), Postives = 104/148 (70.27%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 446 EAKNAGAD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V ++ DK G +H P GK F E+ + N L +K+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 87 EAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFKVDKKGNIHAPIGKVSFPEEKIKENMLELVKTINRLKPNSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 9.133e-39 Identity = 76/145 (52.41%), Postives = 104/145 (71.72%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 +AK AGAD VG DDLIE+I G+ +FD IA+PD+M K+ LGK+LGPRGLMP+PKAGTVT ++ QA++EFK GKVE R D+TG +HIP GK F +DDL N ++A + KP+ +KG + + A I S+MGP I +++ + Sbjct: 86 QAKQAGADFVGSDDLIEKINNEGWTDFDVAIATPDIMRKIGRLGKVLGPRGLMPSPKAGTVTDDVAQAVKEFKAGKVEVRNDRTGNIHIPIGKVSFDKDDLKENLISAFDQLTKMKPENSKGKFIRKAVIASTMGPGINIDLSSL 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38 Identity = 77/144 (53.47%), Postives = 104/144 (72.22%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EAK AGA++VG +DL+E I+GG ++FD+ IA+PDMM V LGKILGP+G+MPNPK GTVT N+ A++ K G+VEYR D+TGI+H GKA FS +D+ NF A I ++ KP GAKG Y K I S+MGP + ++I ++ Sbjct: 86 EAKAAGAEVVGAEDLMEAIQGGSIDFDRCIATPDMMGVVGRLGKILGPKGMMPNPKLGTVTMNVADAVKAAKGGQVEYRVDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGRYVKKVAISSTMGPGVSIDIADL 229
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_CAUSK (50S ribosomal protein L1 OS=Caulobacter sp. (strain K31) GN=rplA PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38 Identity = 76/141 (53.90%), Postives = 102/141 (72.34%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 425 EA AGA+ VG +DL E+I GGFM+FD++IA+PDMM V LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH GK F+++ LLIN A + ++ KP GAKG+Y K + S+MGP +++I Sbjct: 84 EATAAGAEHVGAEDLYEKIVGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVGQAVKDAKGGAVEFRVEKAGIVHAGIGKVSFTDEALLINVKAMVDALVKAKPAGAKGIYVKRIGLSSTMGPGFKIDI 224
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.193e-38 Identity = 75/141 (53.19%), Postives = 103/141 (73.05%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA+ AGAD VG DDL+ +I+G + +FD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +A++E K GKVEYR DKT I+H+P GKA F E L NF ++++ KP AKG Y+KS + S+MGP IR+N Sbjct: 86 EAEKAGADYVGSDDLVAKIQGENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLERAVKEIKAGKVEYRLDKTNIIHVPIGKASFEEAQLAENFKTLLEAVAKAKPAAAKGQYFKSVSVTSTMGPGIRVN 226
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SPHWW (50S ribosomal protein L1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38 Identity = 75/144 (52.08%), Postives = 105/144 (72.92%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EAK AGA++VG +DL+E I+GG ++FD+ IA+PDMM V LGKILGP+GLMPNPK GTVT N+ +A++ K G+VE+R +K GI+H GKA F +DL NF A + +I KP GAKG Y K A + S+MGP +++++ ++ Sbjct: 86 EAKAAGAEVVGAEDLLETIQGGTVDFDRCIATPDMMGLVGRLGKILGPKGLMPNPKLGTVTMNVAEAVKAAKGGQVEFRVEKAGIIHSGIGKASFPAEDLRANFDAFVDAIVKAKPTGAKGKYLKKAAVSSTMGPGVKIDVADV 229
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_LYSSC (50S ribosomal protein L1 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38 Identity = 74/140 (52.86%), Postives = 102/140 (72.86%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA+ AGAD VG + I++I+ G+ +FD ++A+PDMM +V LG++LGP+GLMPNPK GTVT ++ +AIEE K GKVEYRADK GI+H P GK FS L+ NFLA ++ KP AKG Y KS I ++MGP+++++ Sbjct: 86 EAEAAGADYVGDAEYIQKIQQGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAIEEIKAGKVEYRADKAGIIHAPIGKVSFSAAKLVENFLAVFDVVQKAKPAAAKGTYMKSVNITTTMGPAVKID 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GRABC (50S ribosomal protein L1 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38 Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EAK AGAD+VG +DL E ++ G +EFD+ IA+PDMM V LGKILGPRGLMPNPK GTVT ++ A+ K G++E+RA+K GI+H GKA F D L+ N A + +I+ KP GAKG Y + A + SSMGP +RL++ + Sbjct: 85 EAKAAGADVVGAEDLAELVQNGTIEFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQIEFRAEKAGIIHAGIGKASFDADKLVENIRALVDAIQKAKPTGAKGTYLQKAALSSSMGPGMRLDVSSL 228 The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bpback to top |