CX293967

Overview
NameCX293967
Unique NameCX293967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_NASOF (Photosystem II reaction center protein I OS=Nasturtium officinale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_NANDO (Photosystem II reaction center protein I OS=Nandina domestica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_MORIN (Photosystem II reaction center protein I OS=Morus indica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_MANES (Photosystem II reaction center protein I OS=Manihot esculenta GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_MAIZE (Photosystem II reaction center protein I OS=Zea mays GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_LOTJA (Photosystem II reaction center protein I OS=Lotus japonicus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_LOLPR (Photosystem II reaction center protein I OS=Lolium perenne GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_LOBMA (Photosystem II reaction center protein I OS=Lobularia maritima GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_LIRTU (Photosystem II reaction center protein I OS=Liriodendron tulipifera GN=psbI PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_LEMMI (Photosystem II reaction center protein I OS=Lemna minor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
The following BLAST results are available for this feature:
BLAST of CX293967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_NASOF1.172e-13100.00Photosystem II reaction center protein I OS=Nastur... [more]
PSBI_NANDO1.172e-13100.00Photosystem II reaction center protein I OS=Nandin... [more]
PSBI_MORIN1.172e-13100.00Photosystem II reaction center protein I OS=Morus ... [more]
PSBI_MANES1.172e-13100.00Photosystem II reaction center protein I OS=Maniho... [more]
PSBI_MAIZE1.172e-13100.00Photosystem II reaction center protein I OS=Zea ma... [more]
PSBI_LOTJA1.172e-13100.00Photosystem II reaction center protein I OS=Lotus ... [more]
PSBI_LOLPR1.172e-13100.00Photosystem II reaction center protein I OS=Lolium... [more]
PSBI_LOBMA1.172e-13100.00Photosystem II reaction center protein I OS=Lobula... [more]
PSBI_LIRTU1.172e-13100.00Photosystem II reaction center protein I OS=Liriod... [more]
PSBI_LEMMI1.172e-13100.00Photosystem II reaction center protein I OS=Lemna ... [more]

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Properties
Property NameValue
Genbank descriptionC05004B11SK FlavRip1 Citrus clementina cDNA clone C05004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293967 ID=CX293967; Name=CX293967; organism=Citrus clementina; type=EST; length=500bp
AATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTAGAGAATCAAA
TTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAA
AAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGA
GATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATT
CTTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTA
ATCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTA
TAAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTA
AAAGTGTTCGCTAAAGGTAAATTTGAAAAATACCAAGCCATCGCCCGAAA
CGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACACCGGAT
TAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAATAA
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