CX293967

Overview
NameCX293967
Unique NameCX293967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_DRIGR (Photosystem II reaction center protein I OS=Drimys granadensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_DRANE (Photosystem II reaction center protein I OS=Draba nemorosa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_DIOEL (Photosystem II reaction center protein I OS=Dioscorea elephantipes GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_DAUCA (Photosystem II reaction center protein I OS=Daucus carota GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CUCSA (Photosystem II reaction center protein I OS=Cucumis sativus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CRUWA (Photosystem II reaction center protein I OS=Crucihimalaya wallichii GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_COFAR (Photosystem II reaction center protein I OS=Coffea arabica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CITSI (Photosystem II reaction center protein I OS=Citrus sinensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CHLSC (Photosystem II reaction center protein I OS=Chloranthus spicatus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CERDE (Photosystem II reaction center protein I OS=Ceratophyllum demersum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
The following BLAST results are available for this feature:
BLAST of CX293967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_DRIGR1.172e-13100.00Photosystem II reaction center protein I OS=Drimys... [more]
PSBI_DRANE1.172e-13100.00Photosystem II reaction center protein I OS=Draba ... [more]
PSBI_DIOEL1.172e-13100.00Photosystem II reaction center protein I OS=Diosco... [more]
PSBI_DAUCA1.172e-13100.00Photosystem II reaction center protein I OS=Daucus... [more]
PSBI_CUCSA1.172e-13100.00Photosystem II reaction center protein I OS=Cucumi... [more]
PSBI_CRUWA1.172e-13100.00Photosystem II reaction center protein I OS=Crucih... [more]
PSBI_COFAR1.172e-13100.00Photosystem II reaction center protein I OS=Coffea... [more]
PSBI_CITSI1.172e-13100.00Photosystem II reaction center protein I OS=Citrus... [more]
PSBI_CHLSC1.172e-13100.00Photosystem II reaction center protein I OS=Chlora... [more]
PSBI_CERDE1.172e-13100.00Photosystem II reaction center protein I OS=Cerato... [more]

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Properties
Property NameValue
Genbank descriptionC05004B11SK FlavRip1 Citrus clementina cDNA clone C05004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293967 ID=CX293967; Name=CX293967; organism=Citrus clementina; type=EST; length=500bp
AATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTAGAGAATCAAA
TTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAA
AAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGA
GATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATT
CTTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTA
ATCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTA
TAAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTA
AAAGTGTTCGCTAAAGGTAAATTTGAAAAATACCAAGCCATCGCCCGAAA
CGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACACCGGAT
TAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAATAA
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