CX293984

Overview
NameCX293984
Unique NameCX293984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.783e-13
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   18 LRIPLFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHV 305
            +R  + + F      GPL  EPIR VK  +VDA +  +P HRG  QI+P  +   ++AFL A P ++EP+  ++I+   D + A+ +V++  RG +
Sbjct:  565 IRDYIIQGFRWAMEAGPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAFLSARPTILEPLVRLDIKVAPDYIGAVTSVINKHRGKI 660          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            + + F    +EGPL  EPIR +K  + DA I  +P HRG  Q+ P  R   ++ FL + P L+EP+  ++I+ P+D V  +  V++ +RG +  ++ Q G+ A I
Sbjct:  568 ILQGFRLAMKEGPLAHEPIRGLKVVLHDAIIHEDPAHRGPAQLYPAVRNAIFAGFLTSKPTLLEPLQKLDIRVPMDFVGNVSGVITRKRGKI-LNMTQMGSIARI 671          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 3
Query:   18 LRIPLFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            +R  + + F      GPL  EPIR VK  +VDA +  +P HRG  QI+P  +   ++A L A P ++EP+  ++I+   D + A+ +VL+  RG +  D+ Q    AY+
Sbjct:  565 IRDYIVQGFRWATEAGPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKI-LDMTQQEYMAYL 672          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.747e-13
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            + + F    R GPL  E  + VK K++DA +  + +HRG  Q+IP AR     A + A P L+EP+ +V I TP D + A    +S RRG +  D+ Q G  A I+KA
Sbjct:  566 IIQGFKEAMRNGPLAAEKCQGVKVKLMDAVLHEDAIHRGPAQMIPAARFGIRDAMMQANPVLLEPMQFVYINTPQDFMGAAMREISNRRGQI-LDMEQEGDMA-IIKA 671          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 3
Query:   18 LRIPLFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            +R  + + F      GPL  EP+R VK  +VDA +  +P HRG  QI+P  +   ++A L A P L+EP+  ++I+   D + ++ +VL+  RG +  D+ Q    AY+
Sbjct:  565 IRDYIVQGFRWAMEAGPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLVRLDIKVAPDYIGSVTSVLNKHRGKI-LDMTQQEYMAYL 672          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.804e-12
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   18 LRIPLFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHV 305
            +R  + + F      GPL  EP+R VK  +VDA +  +P HRG  QI+P  +   ++A L A P L+EP+  ++I+   D + A+ +VL+  RG +
Sbjct:  565 IRDYIVQGFRWSMEAGPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKI 660          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_SULAC (Elongation factor 2 OS=Sulfolobus acidocaldarius GN=fusA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.077e-12
Identity = 35/105 (33.33%), Postives = 59/105 (56.19%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            L + F    +EGPL  EP+R VK  + DA +  +P HRG  Q+ P  R   ++  L + P L+EP+  ++I+ P++ +  +  V++ +RG V  +V Q G  A +
Sbjct:  568 LLQGFRLAMKEGPLAFEPVRGVKVVLHDAVVHEDPAHRGPAQLYPAVRNAIFAGILTSKPTLLEPLQKLDIRIPMEYLGNVTAVITRKRGKV-INVVQTGNVARV 671          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.077e-12
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHV 305
            L + F     +GPL +E    +K  ++DA+I  + +HRG  Q++P  R+  Y A ++A P LMEP+  V I  P D + A    +  RRG +
Sbjct:  561 LMEGFESALDDGPLANEKAMGIKISLMDAKIHEDAVHRGPAQVLPAIRKAVYGAIMLAQPTLMEPMQKVYISVPQDYMGAATREVQNRRGQI 652          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.248e-12
Identity = 35/109 (32.11%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   18 LRIPLFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            +R  + + F      GPL  EP+R +K  + DA +  +P HRG  QI+P  +   ++A L A P ++EP+  ++I+   D + A+ +VL+  RG +  D+ Q    AY+
Sbjct:  565 IRDYIVQGFRWATEAGPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKI-LDMTQQEYMAYL 672          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.248e-12
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 3
Query:   57 REGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            +EGPL  EP+R VK  + DA I  +P HRG  Q+ P  R   Y++ L  +P L+EP   ++I+ P + + A+  V++  RG +  +V   G  A IV A
Sbjct:  579 KEGPLAKEPVRGVKVILWDAVIHEDPAHRGPAQLYPAVRNAVYASMLTDSPTLLEPWQKLDIRVPNEYIGAVTGVITKHRGKI-LEVIDMGGQARIVAA 676          
The following BLAST results are available for this feature:
BLAST of CX293984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EF2_PYRCJ2.783e-1335.42Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
EF2_SULTO3.635e-1335.24Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_PYRIL3.635e-1334.86Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_METJA4.747e-1338.89Elongation factor 2 OS=Methanocaldococcus jannasch... [more]
EF2_PYRAR1.381e-1233.94Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_PYRAE1.804e-1235.42Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]
EF2_SULAC3.077e-1233.33Elongation factor 2 OS=Sulfolobus acidocaldarius G... [more]
EF2_METST3.077e-1234.78Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_THENV5.248e-1232.11Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_IGNH45.248e-1237.37Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05004D08SK FlavRip1 Citrus clementina cDNA clone C05004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293984 ID=CX293984; Name=CX293984; organism=Citrus clementina; type=EST; length=353bp
GAGCTTGCTGAATGCTGTTAAGGATTCCATTGTTCAAGGATTTCAGTAGG
GGCGCTCGAGAAGGACCCCTCTGTGATGAACCTATCAGAAATGTCAAGTT
TAAAATAGTCGATGCAAGGATTGCACCTGAACCGCTGCATCGAGGATCTG
GACAGATCATTCCCACAGCTCGACGTGTGGCTTATTCAGCTTTTCTTATG
GCTACCCCTCGGCTTATGGAACCGGTGTATTATGTTGAGATACAAACTCC
AATTGATTGTGTCTCTGCAATCTACACGGTGTTATCTACAAGGCGTGGAC
ATGTCACTGCCGATGTTCCTCAGCCAGGAACTCCAGCTTATATTGTTAAG
GCA
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