CX293984

Overview
NameCX293984
Unique NameCX293984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.248e-12
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHV 305
            + + F    R GP+  EP   +K K+VD ++  + +HRG  Q+IP  R   ++A L A P L+EP   + I  P D + A+   +  RRG +
Sbjct:  558 ILEGFREAMRAGPIAREPCMGIKVKLVDCKLHEDAVHRGPAQVIPAVRSAIFAAILQAKPALLEPYQKIFITVPQDMMGAVTREIQGRRGQI 649          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            L + F     +GPL  E    +KFK+ DA++  + +HRG  Q++P  R   Y++ + A P L+EP+  V I TP D +      +  RRG +  D+ Q G  A I
Sbjct:  561 LIEGFESALNDGPLAKEIAMGLKFKLHDAKLHEDAVHRGPAQVLPAIRNAIYASMMSAGPTLLEPMQKVFINTPQDYMGPCTREIQNRRGQI-VDMGQEGDMATI 664          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            + + F  G R GPL  E ++ VK ++VDA    + +HRG  QIIP  R     A   A P L+EP+  V I TP D +      ++ RRG +  D+ Q G  + I
Sbjct:  567 IIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQI-LDMEQEGDMSII 670          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METMJ (Elongation factor 2 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 3
Query:   57 REGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            R GPL DE ++N+K ++VD ++  + +HRG  Q+IP  R    +  LMA   L+EP+  ++I  P + + A  + +  RRG V   + +  T   + KA
Sbjct:  570 RGGPLADELVQNLKIRLVDVKLHEDAIHRGPAQVIPAVRSAVKAGVLMAGDSLLEPIQKIQITVPSEQMGAATSQIQGRRGQVFDMLSEGDTMTIVGKA 668          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            + + F  G R GPL  E ++ VK ++VDA    + +HRG  QIIP  R     A   A P L+EP+  V I TP D +      ++ RRG +  D+ Q G  + I
Sbjct:  567 IIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQI-LDMEQEGDMSII 670          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            + + F  G R GPL  E ++ VK ++VDA    + +HRG  QIIP  R     A   A P L+EP+  V I TP D +      ++ RRG +  D+ Q G  + I
Sbjct:  567 IIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQI-LDMEQEGDMSII 670          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.994e-11
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 3
Query:   63 GPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHV 305
            GPL DEP++N+K  + D ++  + +HRG  Q+IP  R       L+A   L+EPV  ++I  P+D + A  + +  RRG V
Sbjct:  572 GPLADEPVQNLKMTLTDVKLHEDAIHRGPAQVIPAVRGAIKGGMLIAGDSLLEPVQKIQISVPMDQMGAATSQIQGRRGQV 652          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            + + F  G R GPL  E ++ VK K++DA    + +HRG  QIIP  R     A   A P L+EP+  V I TP D +      ++ RRG +  D+ Q G  + I
Sbjct:  567 IIEGFKEGVRNGPLAAEKVQGVKIKLMDATFHEDAIHRGPAQIIPAVRFGVRDAVSQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQI-LDMEQEGDMSII 670          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.443e-11
Identity = 37/105 (35.24%), Postives = 53/105 (50.48%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            + + F  G + GPL  E  + VK K++DA    + +HRG  QIIP  R     A   A P L+EP+  + I TP D +      ++ RRG +  D+ Q G  A I
Sbjct:  567 IIEGFKEGVKGGPLASERAQGVKIKLIDATFHEDAIHRGPSQIIPAIRFGVRDAVSSAKPILLEPMQKIYINTPQDYMGDAIREINNRRGQI-VDMEQEGDMAII 670          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.443e-11
Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = 3
Query:   63 GPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIV 347
            GPL DEP++N+K ++VD ++  + +HRG  Q+IP  R    +  L A   L+EP+  + I  P D +    + +  RRG V  D+   G    +V
Sbjct:  572 GPLADEPVQNMKIRLVDVKLHEDAIHRGPAQVIPAVRSAVKAGILYAGDSLLEPIQKISITVPTDQMGNATSQIQGRRGSV-LDITSEGDTITVV 665          
The following BLAST results are available for this feature:
BLAST of CX293984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EF2_ARCFU5.248e-1233.70Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]
EF2_METS31.169e-1134.29Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
EF2_METMP1.994e-1136.19Elongation factor 2 OS=Methanococcus maripaludis G... [more]
EF2_METMJ1.994e-1133.33Elongation factor 2 OS=Methanoculleus marisnigri (... [more]
EF2_METM71.994e-1136.19Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METM61.994e-1136.19Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METB61.994e-1137.04Elongation factor 2 OS=Methanoregula boonei (strai... [more]
EF2_METM52.605e-1136.19Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METVS4.443e-1135.24Elongation factor 2 OS=Methanococcus vannielii (st... [more]
EF2_METPE4.443e-1133.68Elongation factor 2 OS=Methanosphaerula palustris ... [more]

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Properties
Property NameValue
Genbank descriptionC05004D08SK FlavRip1 Citrus clementina cDNA clone C05004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293984 ID=CX293984; Name=CX293984; organism=Citrus clementina; type=EST; length=353bp
GAGCTTGCTGAATGCTGTTAAGGATTCCATTGTTCAAGGATTTCAGTAGG
GGCGCTCGAGAAGGACCCCTCTGTGATGAACCTATCAGAAATGTCAAGTT
TAAAATAGTCGATGCAAGGATTGCACCTGAACCGCTGCATCGAGGATCTG
GACAGATCATTCCCACAGCTCGACGTGTGGCTTATTCAGCTTTTCTTATG
GCTACCCCTCGGCTTATGGAACCGGTGTATTATGTTGAGATACAAACTCC
AATTGATTGTGTCTCTGCAATCTACACGGTGTTATCTACAAGGCGTGGAC
ATGTCACTGCCGATGTTCCTCAGCCAGGAACTCCAGCTTATATTGTTAAG
GCA
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