CX294013

Overview
NameCX294013
Unique NameCX294013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length319
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71B5_ARATH (Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CYP71B5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.237e-18
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 3
Query:    3 LQRNISSKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYE 314
            L++ + SK   KLPPGP+GLP IGNLHQ      H    ++S++YGP+M L  G  P ++VSS + A+E+LKTH L+ CSRP  V     +YN  D+  +PY E
Sbjct:   18 LKKLLPSKG--KLPPGPKGLPIIGNLHQFGRFL-HKSLHKISQEYGPVMLLHFGVVPVIIVSSKEGAEEVLKTHDLETCSRPKTVGSGLFTYNFKDIGFAPYGE 118          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71DC_CATRO (Tabersonine 16-hydroxylase (Fragment) OS=Catharanthus roseus GN=CYP71D12 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.146e-18
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 3
Query:    9 RNISSKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKL-SYNGLDLTISPYYEY 317
            +N    N+ +LPPGP  +P +GN HQL+    H +  +L+KKYGPLM L++G   ++V SS ++A+EI +TH + F  RP+ +   K+ SY+  D+ +SPY  Y
Sbjct:   16 QNSQYSNHDELPPGPPQIPILGNAHQLSGGHTHHILRDLAKKYGPLMHLKIGEVSTIVASSPQIAEEIFRTHDILFADRPSNLESFKIVSYDFSDMVVSPYGNY 119          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71AC_ARATH (Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=CYP71A12 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.146e-18
Identity = 49/97 (50.52%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   27 NNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYEY 317
            N   LPP P  LP IGNLHQL++  PH     LS +YGPLM L  G  P LVVSS + A+E+LKTH L+F +RP   A   L   G D+   PY EY
Sbjct:   29 NKVNLPPSPWRLPLIGNLHQLSLH-PHRSLHSLSLRYGPLMLLHFGRVPILVVSSGEAAQEVLKTHDLKFANRPRSKAVHGLMNGGRDVVFGPYGEY 124          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71A4_SOLME (Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71A4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.390e-17
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   18 SSKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYEY 317
            S   N  LPP PR LP IGNLHQL  S PH    +LS+KYGP+M L LG  P +V SSV  A++ILKTH   + +RP       L Y   D+  SP+ EY
Sbjct:   29 SKTQNMFLPPSPRKLPIIGNLHQLG-SHPHRSLRKLSQKYGPVMLLHLGSKPVIVASSVDAARDILKTHDHVWATRPKYSIADSLLYGSKDVGFSPFGEY 127          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71BZ_ARATH (Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=CYP71B38 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.815e-17
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 3
Query:   36 KLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPY 308
            KLPPGP GLP IGNLHQL     +  F ++S++YGP++ LRLG  P +VVSS + A+E+LKTH L+ C+RP   A    +YN  D+  +P+
Sbjct:   27 KLPPGPIGLPIIGNLHQLG-KLLYKSFHKISQEYGPVVLLRLGVVPVIVVSSKEGAEEVLKTHDLETCTRPKTAATGLFTYNFKDIGFAPF 116          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71BL_ARATH (Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=CYP71B21 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.370e-17
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 3
Query:   36 KLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYE 314
            KLPPGP  LP IGNLHQL  S  H  F++LS++YGP+M LR G  P +V S+ + A+E+LKTH L+ C+RP   A    +YN  D+  + Y E
Sbjct:   27 KLPPGPISLPIIGNLHQLGKSL-HRSFYKLSQEYGPVMFLRFGVVPVVVFSTKEAAEEVLKTHDLETCTRPKLSATGLFTYNFKDIGFAQYGE 118          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71AL_ARATH (Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=CYP71A21 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.096e-17
Identity = 51/98 (52.04%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   24 KNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYEY 317
            K+NT  P  P  LP IGNLHQL    PH     LS +YGPLM L LG  P LVVSS  +A++ILKTH   F SRP      KL Y+G D+  +PY EY
Sbjct:   29 KSNT--PRSPPRLPLIGNLHQLG-HHPHRSLCSLSHRYGPLMLLHLGRVPVLVVSSADVARDILKTHDRVFASRPRSKLFEKLFYDGRDVAFAPYGEY 123          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71B3_ARATH (Cytochrome P450 71B3 OS=Arabidopsis thaliana GN=CYP71B3 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.043e-17
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   21 SKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYE 314
            SK N  LPP P  LP IGNLHQL     H    +LSKK+GP++ LRLGF   +V+SS + A+E+LK H L+ C+RP   A  K S +G D+  +PY E
Sbjct:   25 SKRN--LPPSPPKLPIIGNLHQLR-GLFHRCLHDLSKKHGPVLLLRLGFIDMVVISSKEAAEEVLKVHDLECCTRPKTNASSKFSRDGKDIAFAPYGE 119          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71AO_ARATH (Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=CYP71A24 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.280e-17
Identity = 48/100 (48.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   18 SSKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYEY 317
            S    +  PP P  LP I NLHQL    PH     LS +YGPLM L  G  P LVVSS   AK++LKTH   F SRP      K+ YNG D+ ++PY EY
Sbjct:   26 SRGKKSNAPPSPPRLPLIRNLHQLG-RHPHRSLCSLSHRYGPLMLLHFGSVPVLVVSSADAAKDVLKTHDRVFASRPRSKIFDKIFYNGRDVALAPYGEY 124          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71BE_ARATH (Cytochrome P450 71B14 OS=Arabidopsis thaliana GN=CYP71B14 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 3
Query:   39 LPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYEY 317
            LPPGP  LP IGNLHQL  SKP    ++LS+KYG LMSL+ G   ++V S+ +  K++LKT   + CSRP      +++YN  DL  SPY +Y
Sbjct:   29 LPPGPPRLPIIGNLHQLG-SKPQRSLFKLSEKYGSLMSLKFGNVSAVVASTPETVKDVLKTFDAECCSRPYMTYPARVTYNFNDLAFSPYSKY 120          
The following BLAST results are available for this feature:
BLAST of CX294013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
C71B5_ARATH6.237e-1846.15Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CY... [more]
C71DC_CATRO8.146e-1841.35Tabersonine 16-hydroxylase (Fragment) OS=Catharant... [more]
C71AC_ARATH8.146e-1850.52Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=C... [more]
C71A4_SOLME1.390e-1749.00Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71... [more]
C71BZ_ARATH1.815e-1749.45Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=C... [more]
C71BL_ARATH2.370e-1749.46Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=C... [more]
C71AL_ARATH3.096e-1752.04Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=C... [more]
C71B3_ARATH4.043e-1748.98Cytochrome P450 71B3 OS=Arabidopsis thaliana GN=CY... [more]
C71AO_ARATH5.280e-1748.00Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=C... [more]
C71BE_ARATH6.896e-1748.39Cytochrome P450 71B14 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05004G11SK FlavRip1 Citrus clementina cDNA clone C05004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294013 ID=CX294013; Name=CX294013; organism=Citrus clementina; type=EST; length=319bp
TTTTGCAGAGGAACATATCCTCAAAAAATAATACTAAATTACCACCAGGC
CCCCGGGGCCTTCCTTTCATCGGTAACTTGCACCAGCTTAATGTCTCAAA
GCCTCACGTATTATTTTGGGAACTGTCAAAAAAATATGGCCCCCTCATGT
CCTTGCGTCTTGGGTTTTCGCCATCCTTAGTAGTTTCCTCAGTGAAAATG
GCTAAAGAGATATTGAAAACTCATGGCCTTCAATTTTGCAGCAGGCCAGC
CTAAGTAGCTCAACGAAAGTTATCTTACAATGGTCTTGATTTAACAATTT
CACCCTATTATGAATATTG
back to top