CX294013

Overview
NameCX294013
Unique NameCX294013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length319
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71DI_MENGR (Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.385e-11
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 3
Query:   21 SKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYEY 317
            SK+   LPP P  LP IG+LH L    P  +F  +++KYGP+  ++LG   S+V+SS + AK+ +K     F  R   +  R + Y+  D+  SPY ++
Sbjct:   28 SKSQQNLPPSPPKLPVIGHLHFLWGGLPQHVFRSIAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDGIGSRTMWYDKDDIIFSPYNDH 126          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: CY250_MOUSE (Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 3
Query:   21 SKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSR 245
            S    KLPPGP  LP IGN+ Q+NV      F  LSK YGP+ +L LG  P++V+   +  KE L  HG +F  R
Sbjct:   23 SSERGKLPPGPTPLPIIGNILQINVKDICQSFTNLSKVYGPVYTLYLGNKPTVVLHGYEAVKEALVDHGEEFAGR 97          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C84A1_ARATH (Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 3
Query:   15 ISSKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPY 308
            I+ +     PPGPRG P IGN+  ++    H     L+KKYG L  LR+GF     VSS ++A+++L+     F +RPA +A   L+Y+  D+  + Y
Sbjct:   32 ITRRRRPPYPPGPRGWPIIGNMLMMD-QLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQVQDSVFSNRPATIAISYLTYDRADMAFAHY 128          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C76C2_ARATH (Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   18 SSKNNTKLPPGPRGLPFIGNLHQLNVSKPHVLFWELSKKYGPLMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISP 305
            SS+     PPGP  LP IGN+H +    PH  F +LSK YGP+MSL+ G   ++VV+S + A+E+L+T+     SR    + R ++++ + +   P
Sbjct:   31 SSRKVVPSPPGPPRLPIIGNIHLVG-RNPHHSFADLSKTYGPIMSLKFGSLNTVVVTSPEAAREVLRTYDQILSSRTPTNSIRSINHDKVSVVWLP 125          
BLAST of CX294013 vs. ExPASy Swiss-Prot
Match: C71C3_MAIZE (Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 3
Query:   18 SSKNNTKLPPGPRG-LPFIGNLHQLNVSKPHVLFWELSKKYGP--LMSLRLGFSPSLVVSSVKMAKEILKTHGLQFCSRPA*VAQRKLSYNGLDLTISPYYEY 317
            S +    LPP P G LP +G+LH +   + H+   EL  KYG    + LR G  P+L+VSS   A+ +++TH     SRP  +A   L YN  D+  SP  EY
Sbjct:   49 SGRGKPPLPPSPPGTLPIVGHLHHIG-PQTHISLQELVAKYGHNGFLFLRAGAVPTLIVSSPSAAEAVMRTHDHICASRPWSMASHILRYNTCDVAFSPLGEY 150          
The following BLAST results are available for this feature:
BLAST of CX294013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
C71DI_MENGR7.385e-1136.36Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D... [more]
CY250_MOUSE9.645e-1145.33Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE... [more]
C84A1_ARATH9.645e-1136.73Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CY... [more]
C76C2_ARATH9.645e-1137.50Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CY... [more]
C71C3_MAIZE9.645e-1138.83Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC05004G11SK FlavRip1 Citrus clementina cDNA clone C05004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294013 ID=CX294013; Name=CX294013; organism=Citrus clementina; type=EST; length=319bp
TTTTGCAGAGGAACATATCCTCAAAAAATAATACTAAATTACCACCAGGC
CCCCGGGGCCTTCCTTTCATCGGTAACTTGCACCAGCTTAATGTCTCAAA
GCCTCACGTATTATTTTGGGAACTGTCAAAAAAATATGGCCCCCTCATGT
CCTTGCGTCTTGGGTTTTCGCCATCCTTAGTAGTTTCCTCAGTGAAAATG
GCTAAAGAGATATTGAAAACTCATGGCCTTCAATTTTGCAGCAGGCCAGC
CTAAGTAGCTCAACGAAAGTTATCTTACAATGGTCTTGATTTAACAATTT
CACCCTATTATGAATATTG
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