CX294030

Overview
NameCX294030
Unique NameCX294030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            IFW NL+P   GGGEP    L  AI   FGS +   +K++A    + GSGW WLG + E   L++    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   76 IFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            IFW NL+P   GGGEP    L  AI   FGS +   +K++A    + GSGW WLG + E   L++    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   76 IFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            IFW NL+P   GGGEP    L  AI   FGS +   +K++A    + GSGW WLG + E   L++    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:  100 IFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_BOVIN (Superoxide dismutase [Mn], mitochondrial OS=Bos taurus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.163e-30
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            IFW NL+P   GGGEP    L  AI   FGS     +K++A    + GSGW WLG + E  RL++   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  +  Y
Sbjct:  100 IFWTNLSP--NGGGEPQGELLE-AIKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTARY 217          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.222e-29
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            IFW NL+P   GGGEP    L  AI   FGS +   ++++A    + GSGW WLG + E   L++    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   76 IFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_CALJA (Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.222e-29
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            IFW NL+P   GGGEP    L  AI   FGS +   ++++A    + GSGW WLG + E   L++    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   76 IFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_RABIT (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.084e-29
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            IFW NL+P   GGGEP    L  AI   FGS +   ++++A    + GSGW WLG + E   L++   ANQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+ W+  ++ Y
Sbjct:   81 IFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAVSVGVQGSGWGWLGFNKEQGHLQIAACANQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVITWENVTERY 198          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.722e-29
Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            +FW+ L  V   G   P+S L  AI   FGSLE +I K++A+  A+ GSGW WL  D E KRL++    NQD L+     L+PL  IDVWEHAYYLQYKN++PD++K IW + NWK  SD Y K
Sbjct:  100 LFWEGLTAVKNSG--EPNSELMTAIKKDFGSLETMIDKLNAKTIAIQGSGWGWLAYDKEMKRLQLACCPNQD-LLEPTTGLIPLFCIDVWEHAYYLQYKNLRPDFVKAIWKIANWKIISDRYIK 220          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_CAEEL (Superoxide dismutase [Mn] 1, mitochondrial OS=Caenorhabditis elegans GN=sod-2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.722e-29
Identity = 70/125 (56.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            IFW NLA   + GGEP  + L  AI + FGSL+ L +++SA   A+ GSGW WLG   + K L+V T ANQDPL  +A T LVPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+ + K
Sbjct:  100 IFWTNLA---KDGGEPS-AELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIWKIANWKNVSERFAK 218          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.351e-28
Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPH--SSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLD-TEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 354
            ++WKNLAPV +GGG+PP   S LG  I   FGSL+ LI+  + + A + GSGW ++  +      ++V TTANQD +    P LVPL+ ID WEHAYYLQY+NVK DY KN+W+V+NWK A
Sbjct:  110 LWWKNLAPVSQGGGQPPSEDSKLGKQIVKQFGSLDKLIEITNGKLAGIQGSGWAFIVKNKANGDTIDVITTANQDTVTD--PNLVPLIAIDAWEHAYYLQYQNVKADYFKNLWHVINWKEA 228          
The following BLAST results are available for this feature:
BLAST of CX294030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SODM_PANTR5.484e-3053.28Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA5.484e-3053.28Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_HUMAN5.484e-3053.28Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM_BOVIN7.163e-3054.10Superoxide dismutase [Mn], mitochondrial OS=Bos ta... [more]
SODM_CEBAP1.222e-2952.46Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]
SODM_CALJA1.222e-2952.46Superoxide dismutase [Mn], mitochondrial OS=Callit... [more]
SODM_RABIT2.084e-2952.46Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_ONCVO2.722e-2950.81Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM1_CAEEL2.722e-2956.00Superoxide dismutase [Mn] 1, mitochondrial OS=Caen... [more]
SODM_CANAL1.351e-2852.07Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]

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Properties
Property NameValue
Genbank descriptionC05005A08SK FlavRip1 Citrus clementina cDNA clone C05005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294030 ID=CX294030; Name=CX294030; organism=Citrus clementina; type=EST; length=570bp
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCACGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGAGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAAT
GTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTA
TGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCT
TGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGA
CGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGATATTTT
GCACATGATGACAGACACCCTTTCTTATGCAGTGAGTGTTACTTGTGTAT
CATTATGTGACATCCAAATA
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