CX294030

Overview
NameCX294030
Unique NameCX294030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_DEBHA (Probable superoxide dismutase [Mn], mitochondrial OS=Debaryomyces hansenii GN=DEHA2E01232g PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFK-RLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 357
            +FWK+LAP  + GG+ P S  +LG  I   +GS++ LI   +A+ A++ GSGW ++  + +    L+V TT NQD   T    LVPL+ ID WEHAYYLQY+NVK DY K IWNV+NW+ AS
Sbjct:   86 LFWKSLAPNSQNGGKHPGSDTNLGKKIIEQYGSIDNLISITNAKLASIQGSGWAFIVKNKQNGGNLDVVTTYNQD---TVTDPLVPLIAIDAWEHAYYLQYQNVKADYFKAIWNVINWEEAS 204          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.636e-24
Identity = 57/123 (46.34%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FW+ L P   GG + P   L  AID  FG   AL +K++       GSGW WL  D  F +L V +TANQD  V       P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A ++Y+
Sbjct:   86 LFWRLLTP---GGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVISTANQDNPVMGG--FAPIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEIYK 202          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            +FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A + ++K
Sbjct:   86 LFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            +FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ IWNV+NW  A + ++K
Sbjct:   86 LFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 7.670e-24
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            IFW+NL+P        P   L  AI++ + SLE   ++++    A+ GSGW WLG + +  +L++    NQDPL      L+PL GIDVWEHAYYLQYKNV+P Y++ IW++ NW   S  +Q+
Sbjct:   93 IFWQNLSP----NKTQPSDDLKKAIESQWKSLEEFKKELTTLTVAVQGSGWGWLGFNKKSGKLQLAALPNQDPLEASTG-LIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIANWDDISCRFQE 211          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 58/115 (50.43%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            IFWKNL+P   GGGEP   +L  AI   FGS E      SA    L GSGW  LG D    RL +E   +Q   ++    L PLL +D+WEHA+YLQYKNVK DY+K +WNV NW
Sbjct:   78 IFWKNLSP--NGGGEPT-GALAEAIAKEFGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGGRLVIEQLTDQQGNISA--NLTPLLMLDMWEHAFYLQYKNVKADYVKAVWNVFNW 187          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ +AP  + GG P   ++  AID  FGS +A  Q+ +  GA   GSGW WL  D + K L + +TANQD  +   P   P+LG DVWEHAYYL+Y+N + +YL N WNV+NW+  +  Y
Sbjct:  125 MFWQIMAP--KAGGTPT-GAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLVSDRQGK-LSITSTANQDNPLMSNPNAYPILGNDVWEHAYYLKYQNRRAEYLTNWWNVVNWQAVNQRY 242          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    4 FWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     LEV +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:  101 FWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 216          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    4 FWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     LEV +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:   86 FWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 201          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.972e-23
Identity = 50/115 (43.48%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            +FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +LE+ +TANQD  +++  T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW
Sbjct:   84 LFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVINW 191          
The following BLAST results are available for this feature:
BLAST of CX294030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SODM_DEBHA1.546e-2449.18Probable superoxide dismutase [Mn], mitochondrial ... [more]
SODM_THEAQ2.636e-2446.34Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM_THET83.443e-2445.97Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET23.443e-2445.97Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_DROME7.670e-2443.55Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_CORDI2.232e-2350.43Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM1_PLEBO2.915e-2345.08Superoxide dismutase [Mn] 1 OS=Plectonema boryanum... [more]
SODM1_BACCR3.807e-2344.72Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM1_BACAN3.807e-2344.72Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_LISIV4.972e-2343.48Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05005A08SK FlavRip1 Citrus clementina cDNA clone C05005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294030 ID=CX294030; Name=CX294030; organism=Citrus clementina; type=EST; length=570bp
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCACGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGAGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAAT
GTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTA
TGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCT
TGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGA
CGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGATATTTT
GCACATGATGACAGACACCCTTTCTTATGCAGTGAGTGTTACTTGTGTAT
CATTATGTGACATCCAAATA
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