CX294030

Overview
NameCX294030
Unique NameCX294030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.108e-22
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 357
            +FW  L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +LE+ +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y++  WNV+NW  A+
Sbjct:   84 LFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEAN 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_MYCPA (Superoxide dismutase [Mn] OS=Mycobacterium paratuberculosis GN=sodA PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            I+WKNL+P    GG+ P   L  AID  FGS +    + SA    L GSGW  LG DT   RL      +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   78 IWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTVGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            +FW  L+P   GGGEP   +L   I++ FGS +   ++ +A  A   GSGW WL ++    +LE+ +T NQD  +++  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV+NW   + +Y +
Sbjct:   84 LFWTLLSP--NGGGEPT-GALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNG--KLEITSTPNQDSPLSEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSE 200          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_ASPFU (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus fumigatus GN=sodB PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSS-LGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FWKNLAP   GGG+   +  L  AI+  +GS +      +     + GSGW WL  D    +L++ TT +QDP+   AP    + G+D+WEHAYYLQY N K  Y K IWNV+NW  A + Y
Sbjct:   79 LFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPVTGAAP----VFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAENRY 197          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_MYCSC (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium scrofulaceum GN=sodA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            I+WKNL+P    GG+ P   L  AID  FGS +    + SA    L GSGW  LG DT   RL      +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   52 IWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 161          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_MYCIT (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium intracellulare GN=sodA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            I+WKNL+P    GG+ P   L  AID  FGS +    + SA    L GSGW  LG DT   RL      +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   52 IWWKNLSP---DGGDKPTGELAAAIDDAFGSFDRFRAQFSAAANGLQGSGWAVLGYDTLGNRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 161          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_MYCAV (Superoxide dismutase [Mn] OS=Mycobacterium avium GN=sodA PE=3 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            I+WKNL+P    GG+ P   L  AID  FGS +    + SA    L GSGW  LG DT   RL      +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   78 IWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 357
            +FW  L+P    GG  P   L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +LE+ +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW  A+
Sbjct:   84 LFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVVNWDEAN 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    4 FWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L+V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:   85 FWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.467e-22
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    4 FWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L+V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:   85 FWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
The following BLAST results are available for this feature:
BLAST of CX294030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SODM_LISMO1.108e-2242.86Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_MYCPA1.889e-2247.83Superoxide dismutase [Mn] OS=Mycobacterium paratub... [more]
SODM_BACSU1.889e-2241.94Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM_ASPFU1.889e-2243.09Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_MYCSC2.467e-2247.83Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCIT2.467e-2247.83Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCAV2.467e-2247.83Superoxide dismutase [Mn] OS=Mycobacterium avium G... [more]
SODM_LISIN2.467e-2242.86Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM_LACLM2.467e-2242.28Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA2.467e-2242.28Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionC05005A08SK FlavRip1 Citrus clementina cDNA clone C05005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294030 ID=CX294030; Name=CX294030; organism=Citrus clementina; type=EST; length=570bp
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCACGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGAGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAAT
GTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTA
TGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCT
TGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGA
CGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGATATTTT
GCACATGATGACAGACACCCTTTCTTATGCAGTGAGTGTTACTTGTGTAT
CATTATGTGACATCCAAATA
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